Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2022g00007 ATGGTTTCATCCTTGATTTACGGATGTTGGATAGTGGTGGTGTTAATTGTTGTTCTGCCACACCAAACCTGTCCCGAGAAGGTGCCCCAATCTTGTTTTGCTTCGTGCGGCAAAATTGCCAACATAACTTATCCATTCCGAGTGAAAGGCGATCCAGAAGAGTGTGGCGTCAAGAGGTACGAGTTGGATTGTGTGAACAACGTAACTGTAGTGAAACTGTATTCTGGAGAATACTATGTTGAGTCAATCAATTACAACAACTACACTATTCGACTTGTTGATCCCAACATTGAACCCACCAATTGTTCCTCCCTCCCTCGCTACTTCTTATACCCTTCCAATTTCTCTGATTATTATGGCTATTCAATCTCGAGGAGCTTGCAAAATCTAGACGTTTATCCGTATCAATTCGGCCCCACGGAGTTCGGTGGGTTAATATTTAAGCAAGTAATTTACATGTACTGTACGAATCCACCTAGTGACGATGCGTATTATGTGGATACCGCATCCTGCCTCAATCAACACATATACGCAATCGTTGGAGATCTGGAATTAGGAAGATTGAAGCCTCAGTGCCGTGTGAAGCTGGTTACCCTCACATCCTTCTGGGATACGGAATATGCAAATGCTAACAGACACGTGGATAACGTTTCGTACATTGACATTCACAGGGCGCTACAGTATGGATTTGAGGTTTCGTGGTTACAATTTTGTTGTCCTTGTGGACCAGGATATTATCGATATTATAATATATGCTTTCTCAAAGGCTTGAACGAGCAATTCCACTATGACAACTTTAGATTTCTATTGGGTGTCACAATTTTCATTGTGCTGTTGATCTACACATGCCTAAGAAGACATAGATCAATATATGGAAATATCGAAGATTTTCTGCAAGGTAATACCCTCATGCCAATAAGGTATTCATACAAAGAGATAAAGCAGATGACTAAAGGTTTTAAGGACAAATTGGGTGAAGGAGGGTATGGCTATGTCTATAAAGGAAAGCTACGTAGTGGACCATTTGTAGCCATAAAGATGTTGAGTAAATCAAAGGCTAATAATGGCCAAGATTTCATCAATGAAGTCGCAACTATTGGAAGAATACACCATTCTAATGTGGTTCGACTTATTGGCTTTTGTGTTGAAGGATCAAAACGTGCTCTTGTCTATGAATTCATGCCTAATGGCTCTCTTGATAAATATATTTTCTCAAAAGAGGGAAGTGTGTCTTTATCTTACAAGAAGATATATGAGATCTCTCTTGGTGTGGCTCGTGGTATTTCTTATCTGCATCAAGGTTGTGATATGCAGATTCTGCATTTCGATATAAAGCCCCATAACATCCTTCTTGATGAAAACTTCATCCCTAAGGTTTCGGACTTTGGCCTTGCAAAGCTTTATCCTACTGACAATAGCATTGTTACTTTGACAGCAGCAAGAGGAACAATTGGTTACATGGCTCCAGAATTGTTCTACCAAAATATTGGGGGAGTATCCTACAAGGCTGATGTCTATAGCTTTGGAATGCTTTTGATGGAAATGGCAAGCATGAGAAAAAATTTGAATCCACGTGTAGAGCGTTCAAGCCAACTTTACTTTCCCTTTTGGATTTATGATCAATTGGGTGAAAATAGGGAGATAGAAATGGAAGATGTTATTAAGGAGGAAAGAGATGATGTGGTAAAGAAAATGTTCATAGTTGCACTATGGTGTATACAGTTAAAGCCTAGTGATCGTCCTTCAATGAACAAAGTAGCAGAGATGCTTGAAGGAGAAGTTGAGAGTATTGAAATGCCTCCAAAGCCTTCCCTGTATCCACATGAAACGATTCAAGAGGATCTCGAAACCAACTCAAACCAAACTGTATCAGATACTGGCTCTACTAGTTATCTTGAGGAAAGTGCTACTGCTACCACTCCTTTAATGCATTCAGTTTGA 1941 0.3988 MVSSLIYGCWIVVVLIVVLPHQTCPEKVPQSCFASCGKIANITYPFRVKGDPEECGVKRYELDCVNNVTVVKLYSGEYYVESINYNNYTIRLVDPNIEPTNCSSLPRYFLYPSNFSDYYGYSISRSLQNLDVYPYQFGPTEFGGLIFKQVIYMYCTNPPSDDAYYVDTASCLNQHIYAIVGDLELGRLKPQCRVKLVTLTSFWDTEYANANRHVDNVSYIDIHRALQYGFEVSWLQFCCPCGPGYYRYYNICFLKGLNEQFHYDNFRFLLGVTIFIVLLIYTCLRRHRSIYGNIEDFLQGNTLMPIRYSYKEIKQMTKGFKDKLGEGGYGYVYKGKLRSGPFVAIKMLSKSKANNGQDFINEVATIGRIHHSNVVRLIGFCVEGSKRALVYEFMPNGSLDKYIFSKEGSVSLSYKKIYEISLGVARGISYLHQGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPTDNSIVTLTAARGTIGYMAPELFYQNIGGVSYKADVYSFGMLLMEMASMRKNLNPRVERSSQLYFPFWIYDQLGENREIEMEDVIKEERDDVVKKMFIVALWCIQLKPSDRPSMNKVAEMLEGEVESIEMPPKPSLYPHETIQEDLETNSNQTVSDTGSTSYLEESATATTPLMHSV 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2022g00007 646 Gene3D Transferase(Phosphotransferase) domain 1 394 600 - -
Gabi2022g00007 646 SMART serkin_6 318 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2022g00007 646 Gene3D Phosphorylase Kinase; domain 1 296 393 - -
Gabi2022g00007 646 ProSitePatterns Protein kinases ATP-binding region signature. 324 346 IPR017441 GO:0005524
Gabi2022g00007 646 Pfam Wall-associated receptor kinase galacturonan-binding 32 94 IPR025287 GO:0030247
Gabi2022g00007 646 PANTHER RUST RESISTANCE KINASE LR10-RELATED 288 612 IPR045874 GO:0004672
Gabi2022g00007 646 CDD STKc_IRAK 324 592 - -
Gabi2022g00007 646 MobiDBLite consensus disorder prediction 615 646 - -
Gabi2022g00007 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 439 451 IPR008271 GO:0004672|GO:0006468
Gabi2022g00007 646 ProSiteProfiles Protein kinase domain profile. 318 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2022g00007 646 FunFam PR5-like receptor kinase 394 602 - -
Gabi2022g00007 646 FunFam serine/threonine-protein kinase PBS1-like 292 393 - -
Gabi2022g00007 646 SUPERFAMILY Protein kinase-like (PK-like) 303 591 IPR011009 -
Gabi2022g00007 646 Pfam Protein kinase domain 321 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2022g00007 Gabi-Chr2022 63256 72680 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2022g00007 36 630 Receptor kinase-like Gene Family AT5G38260 37.089 7.02e-109 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi2022g00007 Pkinase 7.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2022g00007 - - vvo:131596073 800.431