Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2022g00006 ATGATAACCTATTCCCACTTTCTGGTGGTGATGTTGCTCATCCAGGTTTCCAACATGGGGATGTGTGAGATTAATGCGTGTAGGGGGGATTTGAGGTGCGGACGTCACGGCCCTGAGATCCGATTCCCCTTCCGAATCAAAGACAGCGAGGCAGATGAATGTAGCCATAGTAGTGGGTTTGATCTAACTTGCTCAGATAAAAGGGAGACGCTGCTTGAGCTGCCTCCAATCAAACTCAAAGTCAGAAGCATAGATTATACACAACAGCTTTTATACGTATCTGACCCCGAAAATTGTCTTCCAAAACAGTTATTGAAGCTCTATCAATCATCAATTTCTCCTTTTCATCAATTCGAGACATTCGGAGGTATGACTGATAACATCACTTTCCTCAACTGTGATTCAGTTAATGCTGACTATCTACAAGTCACGTTTTCGTGTCCGATTTATGCTGCTGACTCCACCGACAAACTCCTTGGATCAGACCTATTTTCCTGCACCAAGATGTACGACGTGTCTTCAAACATAGACCCATACGAACTGCAAGCAAATAAGTTGGGATTGACATGGTCGAAACCAGATTGTAGCAAGTGTGAAACACAAGGCAAGATGTGTACACTCAAGAACAACGGCACTCGAGACGACATCGAATGTTTTGACCGTTATCACAAACCAATAAAGAAGATAGTTTTAGATGCCACAGCTGTGTTCGTTGGCTCAATTCTGGTGATGCTGATTTTCATAGCGTGTTTGCGTGTCTATTGTTATTTTAAAGCGAAAGGCGAAGATCAGGCTCGAATTGAAAAGTTCTTAGAGGATTATAGAGCTCTTAACCCTGCAAGATTTTCTTATGCTGCTATAAAGAGGATTACAAATAATTTTAGGGACAAGTTAGGTGAAGGAGCTCATGGAGCAGTTTTCAAAGGTAAACTCTCAAATGAAATTCTGGTGGCTGTGAAGATGCTCAACAACACAGAGGGAGATGGGAAAGAGTTCATCAATGAAGTGGAAGCTATGGGCAAAATCCACCACATCAATGTGGTTCGCTTGCTTGGATTCTGTGCTGATGGATTCTATCGTGCTCTTGTTTACAATTTCTTTCCAAATGGGTCATTACAGAACTTCATAATTCCATTTAATAACATTGACAAGGACCGTTTCCTTGATTGGGAGAAGCTGCAACAAATTGCTCTCGGCATAGCTAAAGGGATTGATTATCTTCATCAGGGTTGTGATCATCGAATTCTTCACTTTGACATTAATCCTCACAATGTGTTATTAGATGACAAGTTTGTTCCAAAAATTTCGGATTTTGGTTTGGCAAAGTTGTGTTCTAAGAATCAAAGTATAGTGTCAGTAACTGCTGCCAGGGGGACCTTAGGTTACATTGCACCTGAAGTTTTTTCGAGAAACTTTGGAAATGTGTCTTATAAATCTGACATATATAGTTATGGTATGTTATTGCTTGAAATGGTTGGGGGGAGACAGAATATAGGCAAGTCATCTGATGAAACTTTACAAGTTCTGTATCCAGAATGGATTCATAATCTGCTTGAAGGACGAGATATACTTGTAGAAATTGAGGGAGCTAAAGATCTTAAAATTGTAAAGAAACTTGCATTTGTAGGACTTTGGTGCATTCAATGGCACCCAATGAACCGTCCATCCGTGAAAACTGTGATGCAAATGTTGGAGGGTCAAGATGAAGGAAATTTAATGGTGCCCCCAAGTCCTTTTGACTCGACAACTTCCATTGGTACTACAATTTCGGCAAGATATTCAAGCTTGGAGTTGGAAGTTACACAAGAATAA 1812 0.4056 MITYSHFLVVMLLIQVSNMGMCEINACRGDLRCGRHGPEIRFPFRIKDSEADECSHSSGFDLTCSDKRETLLELPPIKLKVRSIDYTQQLLYVSDPENCLPKQLLKLYQSSISPFHQFETFGGMTDNITFLNCDSVNADYLQVTFSCPIYAADSTDKLLGSDLFSCTKMYDVSSNIDPYELQANKLGLTWSKPDCSKCETQGKMCTLKNNGTRDDIECFDRYHKPIKKIVLDATAVFVGSILVMLIFIACLRVYCYFKAKGEDQARIEKFLEDYRALNPARFSYAAIKRITNNFRDKLGEGAHGAVFKGKLSNEILVAVKMLNNTEGDGKEFINEVEAMGKIHHINVVRLLGFCADGFYRALVYNFFPNGSLQNFIIPFNNIDKDRFLDWEKLQQIALGIAKGIDYLHQGCDHRILHFDINPHNVLLDDKFVPKISDFGLAKLCSKNQSIVSVTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRQNIGKSSDETLQVLYPEWIHNLLEGRDILVEIEGAKDLKIVKKLAFVGLWCIQWHPMNRPSVKTVMQMLEGQDEGNLMVPPSPFDSTTSIGTTISARYSSLELEVTQE 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2022g00006 603 FunFam PR5-like receptor kinase 367 575 - -
Gabi2022g00006 603 ProSiteProfiles Protein kinase domain profile. 292 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2022g00006 603 Pfam Protein kinase domain 296 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2022g00006 603 Gene3D Transferase(Phosphotransferase) domain 1 367 573 - -
Gabi2022g00006 603 Pfam Wall-associated receptor kinase galacturonan-binding 27 95 IPR025287 GO:0030247
Gabi2022g00006 603 PANTHER RUST RESISTANCE KINASE LR10-RELATED 264 582 IPR045874 GO:0004672
Gabi2022g00006 603 ProSitePatterns Protein kinases ATP-binding region signature. 298 320 IPR017441 GO:0005524
Gabi2022g00006 603 FunFam serine/threonine-protein kinase PBS1-like 260 366 - -
Gabi2022g00006 603 SUPERFAMILY Protein kinase-like (PK-like) 275 565 IPR011009 -
Gabi2022g00006 603 Gene3D Phosphorylase Kinase; domain 1 267 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2022g00006 Gabi-Chr2022 61020 63131 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2022g00006 2 578 Receptor kinase-like Gene Family AT1G66910 32.598 4.23e-98 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi2022g00006 Pkinase 3.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2022g00006 - - gmx:102662104 685.256