Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2022g00005 ATGATAACCTATTCCCACTTTCTGGTGGTGATGTTGCTCATCCAGGTTTCCAACATGGGGATGTGTGAGATTAATGCGTGTAGGGGGGATTTGAGGTGCGGACGTCACGGCCCTGAGATCCGATTCCCCTTCCGAATCAAAGACAGCGAGGCAGATGAATGTAGCCATAGTAGTGGGTTTGATCTAACTTGCTCAGATAAAAGGGAGACGCTGCTTGAGCTGCCTCCAATCAAACTCAAAGTCAGAAGCATAGATTATACACAACAGCTTTTATACGTATCTGACCCCGAAAATTGTCTTCCAAAACAGTTATTGAAGCTCTATCAATCATCAATTTCTCCTTTTCATCAATTCGAGACATTCGGAGACCTATTTTCCTGCACCAAGATGTACGACGTGTCTTCAAACATAGACCCATACGAACTGCAAGCAAATAAGTTGGGATTGACATGGTCGAAACCAGATTGTAGCAAGTGTGAAACACAAGGCAAGATGTGTACACTCAAGAACAACGGCACTCGAGACGACATCGAATGTTTTGACCGTTATCACAAACCAATAAAGAAGATAGTTTTAGATGCCACAGCTGTGTTCGTTGGCTCAATTCTGGTGATGCTGATTTTCATAGCGTGTTTGCGTGTCTATTGTTATTTTAAAGCGAAAGGCGAAGATCAGGCTCGAATTGAAAAGTTCTTAGAGGATTATAGAGCTCTTAACCCTGCAAGATTTTCTTATGCTGCTATAAAGAGGATTACAAATAATTTTAGGGACAAGTTAGGTGAAGGAGCTCATGGAGCAGTTTTCAAAGGTAAACTCTCAAATGAAATTCTGGTGGCTGTGAAGATGCTCAACAACACAGAGGGAGATGGGAAAGAGTTCATCAATGAAGTGGAAGCTATGGGCAAAATCCACCACATCAATGTGGTTCGCTTGCTTGGATTCTGTGCTGATGGATTCTATCGTGCTCTTGTTTACAATTTCTTTCCAAATGGGTCATTACAGAACTTCATAATTCCATTTAATAACATTGACAAGGACCGTTTCCTTGATTGGGAGAAGCTGCAACAAATTGCTCTCGGCATAGCTAAAGGGATTGATTATCTTCATCAGGGTTGTGATCATCGAATTCTTCACTTTGACATTAATCCTCACAATGTGTTATTAGATGACAAGTTTGTTCCAAAAATTTCGGATTTTGGTTTGGCAAAGTTGTGTTCTAAGAATCAAAGTATAGTGTCAGTAACTGCTGCCAGGGGGACCTTAGGTTACATTGCACCTGAAGTTTTTTCGAGAAACTTTGGAAATGTGTCTTATAAATCTGACATATATAGTTATGGTATGTTATTGCTTGAAATGGTTGGGGGGAGACAGAATATAGGCAAGTCATCTGATGAAACTTTACAAGTTCTGTATCCAGAATGGATTCATAATCTGCTTGAAGGACGAGATATACTTGTAGAAATTGAGGGAGCTAAAGATCTTAAAATTGTAAAGAAACTTGCATTTGTAGGACTTTGGTGCATTCAATGGCACCCAATGAACCGTCCATCCGTGAAAACTGTGATGCAAATGTTGGAGGGTCAAGATGAAGGAAATTTAATGGTGCCCCCAAGTCCTTTTGACTCGACAACTTCCATTGGTACTACAATTTCGGCAAGATATTCAAGCTTGGAGTTGGAAGTTACACAAGAATAA 1695 0.4041 MITYSHFLVVMLLIQVSNMGMCEINACRGDLRCGRHGPEIRFPFRIKDSEADECSHSSGFDLTCSDKRETLLELPPIKLKVRSIDYTQQLLYVSDPENCLPKQLLKLYQSSISPFHQFETFGDLFSCTKMYDVSSNIDPYELQANKLGLTWSKPDCSKCETQGKMCTLKNNGTRDDIECFDRYHKPIKKIVLDATAVFVGSILVMLIFIACLRVYCYFKAKGEDQARIEKFLEDYRALNPARFSYAAIKRITNNFRDKLGEGAHGAVFKGKLSNEILVAVKMLNNTEGDGKEFINEVEAMGKIHHINVVRLLGFCADGFYRALVYNFFPNGSLQNFIIPFNNIDKDRFLDWEKLQQIALGIAKGIDYLHQGCDHRILHFDINPHNVLLDDKFVPKISDFGLAKLCSKNQSIVSVTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRQNIGKSSDETLQVLYPEWIHNLLEGRDILVEIEGAKDLKIVKKLAFVGLWCIQWHPMNRPSVKTVMQMLEGQDEGNLMVPPSPFDSTTSIGTTISARYSSLELEVTQE 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2022g00005 564 ProSiteProfiles Protein kinase domain profile. 253 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2022g00005 564 SUPERFAMILY Protein kinase-like (PK-like) 236 526 IPR011009 -
Gabi2022g00005 564 Pfam Wall-associated receptor kinase galacturonan-binding 27 95 IPR025287 GO:0030247
Gabi2022g00005 564 Pfam Protein kinase domain 257 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2022g00005 564 FunFam PR5-like receptor kinase 328 536 - -
Gabi2022g00005 564 Gene3D Phosphorylase Kinase; domain 1 228 327 - -
Gabi2022g00005 564 Gene3D Transferase(Phosphotransferase) domain 1 328 534 - -
Gabi2022g00005 564 ProSitePatterns Protein kinases ATP-binding region signature. 259 281 IPR017441 GO:0005524
Gabi2022g00005 564 FunFam serine/threonine-protein kinase PBS1-like 221 327 - -
Gabi2022g00005 564 PANTHER RUST RESISTANCE KINASE LR10-RELATED 225 543 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2022g00005 Gabi-Chr2022 61020 63131 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2022g00005 155 539 Receptor kinase-like Gene Family AT1G66910 40.394 4.71e-97 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi2022g00005 Pkinase 2.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2022g00005 - - gmx:100819302 651.744