Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2022g00004 ATGGGGATGTGTGAGATTAATGCGTGTAGGGGGGATTTGAGGTGCGGACGTCACGGCCCTGAGATCCGATTCCCCTTCCGAATCAAAGACAGCGAGGCAGATGAATGTAGCCATAGTAGTGGGTTTGATCTAACTTGCTCAGATAAAAGGGAGACGCTGCTTGAGCTGCCTCCAATCAAACTCAAAGTCAGAAGCATAGATTATACACAACAGCTTTTATACGTATCTGACCCCGAAAATTGTCTTCCAAAACAGTTATTGAAGCTCTATCAATCATCAATTTCTCCTTTTCATCAATTCGAGACATTCGGAGGTATGACTGATAACATCACTTTCCTCAACTGTGATTCAGTTAATGCTGACTATCTACAAGTCACGTTTTCGTGTCCGATTTATGCTGCTGACTCCACCGACAAACTCCTTGGATCAGACCTATTTTCCTGCACCAAGATGTACGACGTGTCTTCAAACATAGACCCATACGAACTGCAAGCAAATAAGTTGGGATTGACATGGTCGAAACCAGATTGTAGCAAGTGTGAAACACAAGGCAAGATGTGTACACTCAAGAACAACGGCACTCGAGACGACATCGAATGTTTTGACCGTTATCACAAACCAATAAAGAAGATAGTTTTAGATGCCACAGCTGTGTTCGTTGGCTCAATTCTGGTGATGCTGATTTTCATAGCGTGTTTGCGTGTCTATTGTTATTTTAAAGCGAAAGGCGAAGATCAGGCTCGAATTGAAAAGTTCTTAGAGGATTATAGAGCTCTTAACCCTGCAAGATTTTCTTATGCTGCTATAAAGAGGATTACAAATAATTTTAGGGACAAGTTAGGTGAAGGAGCTCATGGAGCAGTTTTCAAAGGTAAACTCTCAAATGAAATTCTGGTGGCTGTGAAGATGCTCAACAACACAGAGGGAGATGGGAAAGAGTTCATCAATGAAGTGGAAGCTATGGGCAAAATCCACCACATCAATGTGGTTCGCTTGCTTGGATTCTGTGCTGATGGATTCTATCGTGCTCTTGTTTACAATTTCTTTCCAAATGGGTCATTACAGAACTTCATAATTCCATTTAATAACATTGACAAGGACCGTTTCCTTGATTGGGAGAAGCTGCAACAAATTGCTCTCGGCATAGCTAAAGGGATTGATTATCTTCATCAGGGTTGTGATCATCGAATTCTTCACTTTGACATTAATCCTCACAATGTGTTATTAGATGACAAGTTTGTTCCAAAAATTTCGGATTTTGGTTTGGCAAAGTTGTGTTCTAAGAATCAAAGTATAGTGTCAGTAACTGCTGCCAGGGGGACCTTAGGTTACATTGCACCTGAAGTTTTTTCGAGAAACTTTGGAAATGTGTCTTATAAATCTGACATATATAGTTATGGTATGTTATTGCTTGAAATGGTTGGGGGGAGACAGAATATAGGCAAGTCATCTGATGAAACTTTACAAGTTCTGTATCCAGAATGGATTCATAATCTGCTTGAAGGACGAGATATACTTGTAGAAATTGAGGGAGCTAAAGATCTTAAAATTGTAAAGAAACTTGCATTTGTAGGACTTTGGTGCATTCAATGGCACCCAATGAACCGTCCATCCGTGAAAACTGTGATGCAAATGTTGGAGGGTCAAGATGAAGGAAATTTAATGGTGCCCCCAAGTCCTTTTGACTCGACAACTTCCATTGGTACTACAATTTCGGCAAGATATTCAAGCTTGGAGTTGGAAGTTACACAAGAATAA 1758 0.4044 MGMCEINACRGDLRCGRHGPEIRFPFRIKDSEADECSHSSGFDLTCSDKRETLLELPPIKLKVRSIDYTQQLLYVSDPENCLPKQLLKLYQSSISPFHQFETFGGMTDNITFLNCDSVNADYLQVTFSCPIYAADSTDKLLGSDLFSCTKMYDVSSNIDPYELQANKLGLTWSKPDCSKCETQGKMCTLKNNGTRDDIECFDRYHKPIKKIVLDATAVFVGSILVMLIFIACLRVYCYFKAKGEDQARIEKFLEDYRALNPARFSYAAIKRITNNFRDKLGEGAHGAVFKGKLSNEILVAVKMLNNTEGDGKEFINEVEAMGKIHHINVVRLLGFCADGFYRALVYNFFPNGSLQNFIIPFNNIDKDRFLDWEKLQQIALGIAKGIDYLHQGCDHRILHFDINPHNVLLDDKFVPKISDFGLAKLCSKNQSIVSVTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRQNIGKSSDETLQVLYPEWIHNLLEGRDILVEIEGAKDLKIVKKLAFVGLWCIQWHPMNRPSVKTVMQMLEGQDEGNLMVPPSPFDSTTSIGTTISARYSSLELEVTQE 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2022g00004 585 SUPERFAMILY Protein kinase-like (PK-like) 257 547 IPR011009 -
Gabi2022g00004 585 Pfam Protein kinase domain 278 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2022g00004 585 Gene3D Phosphorylase Kinase; domain 1 249 348 - -
Gabi2022g00004 585 FunFam PR5-like receptor kinase 349 557 - -
Gabi2022g00004 585 Gene3D Transferase(Phosphotransferase) domain 1 349 555 - -
Gabi2022g00004 585 ProSitePatterns Protein kinases ATP-binding region signature. 280 302 IPR017441 GO:0005524
Gabi2022g00004 585 Pfam Wall-associated receptor kinase galacturonan-binding 9 77 IPR025287 GO:0030247
Gabi2022g00004 585 FunFam serine/threonine-protein kinase PBS1-like 242 348 - -
Gabi2022g00004 585 ProSiteProfiles Protein kinase domain profile. 274 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2022g00004 585 PANTHER RUST RESISTANCE KINASE LR10-RELATED 246 564 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2022g00004 Gabi-Chr2022 61020 67837 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2022g00004 9 560 Receptor kinase-like Gene Family AT1G66910 33.059 1.93e-97 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi2022g00004 Pkinase 2.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2022g00004 - - gmx:102662104 681.789