Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2022g00002 ATGCCAATAAGGTATTCATACAAAGAGATAAAGCAGATGACTAAAGGTTTTAAGGACAAATTGGGTGAAGGAGGGTATGGCTATGTCTATAAAGGAAAGCTACGTAGTGGACCATTTGTAGCCATAAAGATGTTGAGTAAATCAAAGGCTAATAATGGCCAAGATTTCATCAATGAAGTCGCAACTATTGGAAGAATACACCATTCTAATGTGGTTCGACTTATTGGCTTTTGTGTTGAAGGATCAAAACGTGCTCTTGTCTATGAATTCATGCCTAATGGCTCTCTTGATAAATATATTTTCTCAAAAGAGGGAAGTGTGTCTTTATCTTACAAGAAGATATATGAGATCTCTCTTGGTGTGGCTCGTGGTATTTCTTATCTGCATCAAGGTTGTGATATGCAGATTCTGCATTTCGATATAAAGCCCCATAACATCCTTCTTGATGAAAACTTCATCCCTAAGGTTTCGGACTTTGGCCTTGCAAAGCTTTATCCTACTGACAATAGCATTGTTACTTTGACAGCAGCAAGAGGAACAATTGGTTACATGGCTCCAGAATTGTTCTACCAAAATATTGGGGGAGTATCCTACAAGGCTGATGTCTATAGCTTTGGAATGCTTTTGATGGAAATGGCAAGCATGAGAAAAAATTTGAATCCACGTGTAGAGCGTTCAAGCCAACTTTACTTTCCCTTTTGGATTTATGATCAATTGGGTGAAAATAGGGAGATAGAAATGGAAGATGTTATTAAGGAGGAAAGAGATGATGTGGTAAAGAAAATGTTCATAGTTGCACTATGGTGTATACAGTTAAAGCCTAGTGATCGTCCTTCAATGAACAAAGTAGCAGAGATGCTTGAAGGAGAAGTTGAGAGTATTGAAATGCCTCCAAAGCCTTCCCTGTATCCACATGAAACGATTCAAGAGGATCTCGAAACCAACTCAAACCAAACTGTATCAGATACTGGCTCTACTAGTTATCTTGAGGAAATTGCTACCACTCCTTTAATGCATTCAGCTTGA 1026 0.383 MPIRYSYKEIKQMTKGFKDKLGEGGYGYVYKGKLRSGPFVAIKMLSKSKANNGQDFINEVATIGRIHHSNVVRLIGFCVEGSKRALVYEFMPNGSLDKYIFSKEGSVSLSYKKIYEISLGVARGISYLHQGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPTDNSIVTLTAARGTIGYMAPELFYQNIGGVSYKADVYSFGMLLMEMASMRKNLNPRVERSSQLYFPFWIYDQLGENREIEMEDVIKEERDDVVKKMFIVALWCIQLKPSDRPSMNKVAEMLEGEVESIEMPPKPSLYPHETIQEDLETNSNQTVSDTGSTSYLEEIATTPLMHSA 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2022g00002 341 SUPERFAMILY Protein kinase-like (PK-like) 3 288 IPR011009 -
Gabi2022g00002 341 PIRSF TyrPK_CSF1-R 25 107 - -
Gabi2022g00002 341 PIRSF TyrPK_CSF1-R 93 339 - -
Gabi2022g00002 341 CDD STKc_IRAK 21 289 - -
Gabi2022g00002 341 SMART serkin_6 15 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2022g00002 341 Pfam Protein kinase domain 18 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2022g00002 341 FunFam PR5-like receptor kinase 91 299 - -
Gabi2022g00002 341 FunFam serine/threonine-protein kinase PBS1-like 1 90 - -
Gabi2022g00002 341 Gene3D Transferase(Phosphotransferase) domain 1 91 297 - -
Gabi2022g00002 341 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Gabi2022g00002 341 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Gabi2022g00002 341 PANTHER RUST RESISTANCE KINASE LR10-RELATED 4 309 IPR045874 GO:0004672
Gabi2022g00002 341 ProSiteProfiles Protein kinase domain profile. 15 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2022g00002 341 ProSitePatterns Protein kinases ATP-binding region signature. 21 43 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2022g00002 Gabi-Chr2022 49731 50939 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2022g00002 4 331 Receptor kinase-like Gene Family AT4G18250 49.405 7.45e-108 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gabi2022g00002 Pkinase 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2022g00002 - - mtr:120580205 562.762