Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2021g00016 ATGAACCACGAAAACAAAGTCACCATGGACCTTGTTCCACCATCTGAACACCTCTGCTACGTTCGTTGCAACTTCTGTAACACTGTGCTCGCGGTTGGCATCCCATGCAAGAGGCTTCTAGATACTGTGACAGTGAAGTGTGGTCACTGCAGCAACCTCTCTTTTCTCAGCACCAGACCCCCAAATTCTCAAAACCTAAACATTGATCACACCCTGAGTCTCCAGGGGTTTTACAGTGATGCCAAAAAGGGACAAGCATCATCTTCATCTTCCTCACCAACTACATCTAACGAGTCATTGTCCCCTAAAGCAGCACCATTTGTTGTTAAACCACCTGAGAAGAAGCACCGTCTCCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATACAGCGCATCAAAGCAGCAAACCCTGAGATTCCACATCGAGAAGCCTTCAGCGCTGCAGCCAAAAATTGGGCCAGGTTCATTCCAAATTCGCCAACCAGTTCAATTTCTGCAAGTAAAAATCATTGTGGAGATGGACTTTATGCCAGCATGTAG 543 0.4641 MNHENKVTMDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPNSQNLNIDHTLSLQGFYSDAKKGQASSSSSSPTTSNESLSPKAAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARFIPNSPTSSISASKNHCGDGLYASM 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2021g00016 180 CDD HMG-box_SF 117 153 - -
Gabi2021g00016 180 MobiDBLite consensus disorder prediction 83 115 - -
Gabi2021g00016 180 FunFam Protein CRABS CLAW 89 160 - -
Gabi2021g00016 180 SUPERFAMILY HMG-box 101 154 IPR036910 -
Gabi2021g00016 180 Pfam YABBY protein 14 156 IPR006780 GO:0007275
Gabi2021g00016 180 MobiDBLite consensus disorder prediction 83 102 - -
Gabi2021g00016 180 PANTHER PROTEIN YABBY 6-RELATED 14 163 IPR006780 GO:0007275
Gabi2021g00016 180 Gene3D High mobility group box domain 95 160 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2021g00016 Gabi-Chr2021 183583 185210 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2021g00016 1 170 C2C2-YABBY Transcription Factor Family AT1G69180 64.943 1.59e-67 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Gabi2021g00016 YABBY 2.4e-56 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2021g00016 K25796 - gmx:100819079 321.242