Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2021g00013 ATGGAATCTTGGAGTTACGTCCCTGAAGAGAAAGGGTGTTTGTTTTCTGATGAAATGGATTTTTCACTGGATGCTTTTATGAGAAGTAGAAAAGCATTGGTTGAATGGGACAACAAATCTTCCTGTAACTTTGAGAGAGATGGATTTAATTCAGACAGAGAGGGAGTTAATAGCATGGAATTTGTGGAGTTGGGGTTTCCTGACTTGTTCCAAAAGTCTTTTCATGGTAGCCAGCCTCTAGAGACATCCAGCTGTGACCTAGATAGTAATTCTAGTAAAAGAGGGAATTCCTCCACCCATGTTATTGCTCTGGATTCATCTTTAGGTGAAGAAGAATTGGAGTCAAAGCATTTAAGTTCTCTAGTTGAATCCAAAAGTTATGATTCTTCACTGATTGATCTGAAGCTAGGGAGGTTTGCAGATTGTAAAGGTGCAAGCAGTGATCAAATTTCAAAAGAAGGGTTCACTTTAACATCTATACATCCAACCACGCTTGCAAAGAGAGCTCGCACTTCCAGCTTACCTGCTCAGGCTCCTGTATGTCAAGTTTATGGTTGTAACATGGATCTTAGCTCCTCAAAAGATTACCATAAAAGGCATAAAGTTTGTGATGTTCACTCCAAGACAGCTAAAGTTATTGTTAATGGCATTGAACAGAGGTTTTGTCAGCAGTGCAGCAGGCGTCTAGCAGGTCACAATGAACGCCGAAGGAAACCTCAGTTTGATTACATGACTGGTAAACAACACAAGATTCTTCAGTCATATCAAGGTACCAAGTATATGGGGTCTTCATTACAGAACAGACCCCACTTTGCCTTTCAAGACATATTTCAAAGTGGCATCCTTTTCCAAGGAAAGCATGATCAAATCTTTGAGAGTGGATATATCAAATTGGAAGATGAATCAAATTACAATCCTCCGCTAGCAGCACCCATCACACTTGGTCAGGAGTTATCAAACCGTGCTCTCTCTCTTCTGTCATCTCAGTCACAGAATCCATCATGCCACTCTGCAGGAAATCCATTAGCTAGTTCCCTTATTTTTCAGGGCATCTGCATGCATGACAGAGATGACCAAGTTTCTGAAACACCTTTGAGGTTAAGCTCTGTGGATAAATATGTACCAAAAGAGCCCTTTCCATGTGGTACAAACTCTAAGGAAGTTGTCAAGAATGGATCCACAATACATTCTGGTGCTGGTCATACTTTTCAAGTCCACAAAGATGATATTTGCCAACCATCAGGCTTATTCAATGTCAAATATCGTCTTTCCTCTGAACATGGTGCCACTGTTGATCTGTTCCAGTTGTCTTCACATCTTCAGAGGGTGGAGCAGCAAAGAAATTCAGTTTTGGTAAAGTTGGAAAATGAGGATTGCTGTTTCCCAACCCTGTAA 1395 0.4079 MESWSYVPEEKGCLFSDEMDFSLDAFMRSRKALVEWDNKSSCNFERDGFNSDREGVNSMEFVELGFPDLFQKSFHGSQPLETSSCDLDSNSSKRGNSSTHVIALDSSLGEEELESKHLSSLVESKSYDSSLIDLKLGRFADCKGASSDQISKEGFTLTSIHPTTLAKRARTSSLPAQAPVCQVYGCNMDLSSSKDYHKRHKVCDVHSKTAKVIVNGIEQRFCQQCSRRLAGHNERRRKPQFDYMTGKQHKILQSYQGTKYMGSSLQNRPHFAFQDIFQSGILFQGKHDQIFESGYIKLEDESNYNPPLAAPITLGQELSNRALSLLSSQSQNPSCHSAGNPLASSLIFQGICMHDRDDQVSETPLRLSSVDKYVPKEPFPCGTNSKEVVKNGSTIHSGAGHTFQVHKDDICQPSGLFNVKYRLSSEHGATVDLFQLSSHLQRVEQQRNSVLVKLENEDCCFPTL 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2021g00013 464 SUPERFAMILY SBT domain 179 244 IPR036893 GO:0003677|GO:0005634
Gabi2021g00013 464 ProSiteProfiles Zinc finger SBP-type profile. 178 239 IPR004333 GO:0003677
Gabi2021g00013 464 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 101 413 IPR044817 GO:0003677
Gabi2021g00013 464 Pfam SBP domain 181 236 IPR004333 GO:0003677
Gabi2021g00013 464 Gene3D - 172 271 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2021g00013 Gabi-Chr2021 122628 128129 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2021g00013 95 462 SBP-box Gene Family AT1G69170 35.052 1.88e-47 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gabi2021g00013 SBP 2.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2021g00013 - - gmx:100820149 697.582