Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2021g00012 ATGGAATCTTGGAGTTACGTCCCTGAAGAGAAAGGGTGTTTGTTTTCTGATGAAATGGATTTTTCACTGGATGCTTTTATGAGAAGTAGAAAAGCATTGGTTGAATGGGACAACAAATCTTCCTGTAACTTTGAGAGAGATGGATTTAATTCAGACAGAGAGGGAGTTAATAGCATGGAATTTGTGGAGTTGGGGTTTCCTGACTTGTTCCAAAAGTCTTTTCATGGTAGCCAGCCTCTAGAGACATCCAGCTGTGACCTAGATAGTAATTCTAGTAAAAGAGGGAATTCCTCCACCCATGTTATTGCTCTGGATTCATCTTTAGGTGAAGAAGAATTGGAGTCAAAGCATTTAAGTTCTCTAGTTGAATCCAAAAGTTATGATTCTTCACTGATTGATCTGAAGCTAGGGAGGTTTGCAGATTGTAAAGGTGCAAGCAGTGATCAAATTTCAAAAGAAGGGTTCACTTTAACATCTATACATCCAACCACGCTTGCAAAGAGAGCTCGCACTTCCAGCTTACCTGCTCAGGCTCCTGTATGTCAAGTTTATGGTTGTAACATGGATCTTAGCTCCTCAAAAGATTACCATAAAAGGCATAAAGTTTGTGATGTTCACTCCAAGACAGCTAAAGTTATTGTTAATGGCATTGAACAGAGGTTTTGTCAGCAGTGCAGCAGGTTCCATTTGCTGGCTGAGTTTGATGATGGTAAGCGTAGTTGTCGCAGGCGTCTAGCAGGTCACAATGAACGCCGAAGGAAACCTCAGTTTGATTACATGACTGGTAAACAACACAAGATTCTTCAGTCATATCAAGGTACCAAGTATATGGGGTCTTCATTACAGAACAGACCCCACTTTGCCTTTCAAGACATATTTCAAAGTGGCATCCTTTTCCAAGGAAAGCATGATCAAATCTTTGAGAGTGGATATATCAAATTGGAAGATGAATCAAATTACAATCCTCCGCTAGCAGCACCCATCACACTTGGTCAGGAGTTATCAAACCGTGCTCTCTCTCTTCTGTCATCTCAGTCACAGAATCCATCATGCCACTCTGCAGGAAATCCATTAGCTAGTTCCCTTATTTTTCAGGGCATCTGCATGCATGACAGAGATGACCAAGTTTCTGAAACACCTTTGAGGTTAAGCTCTGTGGATAAATATGTACCAAAAGAGCCCTTTCCATGTGGTACAAACTCTAAGGAAGTTGTCAAGAATGGATCCACAATACATTCTGGTGCTGGTCATACTTTTCAAGTCCACAAAGATGATATTTGCCAACCATCAGGCTTATTCAATGTCAAATATCGTCTTTCCTCTGAACATGGTGCCACTGTTGATCTGTTCCAGTTGTCTTCACATCTTCAGAGGGTGGAGCAGCAAAGAAATTCAGTTTTGGTAAAGTTGGAAAATGAGGATTGCTGTTTCCCAACCCTGTAA 1443 0.4103 MESWSYVPEEKGCLFSDEMDFSLDAFMRSRKALVEWDNKSSCNFERDGFNSDREGVNSMEFVELGFPDLFQKSFHGSQPLETSSCDLDSNSSKRGNSSTHVIALDSSLGEEELESKHLSSLVESKSYDSSLIDLKLGRFADCKGASSDQISKEGFTLTSIHPTTLAKRARTSSLPAQAPVCQVYGCNMDLSSSKDYHKRHKVCDVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQFDYMTGKQHKILQSYQGTKYMGSSLQNRPHFAFQDIFQSGILFQGKHDQIFESGYIKLEDESNYNPPLAAPITLGQELSNRALSLLSSQSQNPSCHSAGNPLASSLIFQGICMHDRDDQVSETPLRLSSVDKYVPKEPFPCGTNSKEVVKNGSTIHSGAGHTFQVHKDDICQPSGLFNVKYRLSSEHGATVDLFQLSSHLQRVEQQRNSVLVKLENEDCCFPTL 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2021g00012 480 SUPERFAMILY SBT domain 179 260 IPR036893 GO:0003677|GO:0005634
Gabi2021g00012 480 ProSiteProfiles Zinc finger SBP-type profile. 178 255 IPR004333 GO:0003677
Gabi2021g00012 480 FunFam Squamosa promoter-binding-like protein 14 172 242 - -
Gabi2021g00012 480 Gene3D - 172 242 IPR036893 GO:0003677|GO:0005634
Gabi2021g00012 480 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 94 429 IPR044817 GO:0003677
Gabi2021g00012 480 Pfam SBP domain 181 254 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2021g00012 Gabi-Chr2021 122555 128129 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2021g00012 95 478 SBP-box Gene Family AT1G69170 38.660 3.11e-63 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gabi2021g00012 SBP 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2021g00012 - - gmx:100820149 741.88