Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2021g00008 ATGGGCAGGGGGAAGGTGGAGCTGAAGAGGATTGAGAACAAGATAAACCGTCAAGTTACATTTGCAAAGAGAAGGAATGGGTTGCTCAAGAAGGCTTATGAGCTCTCTGTCCTCTGTGATGCTGAAGTTGCCCTCATTATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGCACCTCTAGCGGCATGACCAAGACACTTGAACGGTATCAAAGATGCAGTTATGCAGCCTTGGAAGTGCACCACCAATCTGCAAATGAGACACAGAGGCGCTACCAAGAGTATCTCAAGCTGAAATCAAAAGTTCAGGCACTACAGCAAAACCAGAGAAACTTCCTTGGGGAAGATTTGGAGCACTTAGATATTAAGGAGCTTGAGCAGCTTGAACATCAACTGGACTCTTCCTTGAAGCAAATAAGGTCTAACAAGACACAACAAACGCTTGAACAACTCTCTGATTTACAAAAAAAGGAGGAGATGCTACTGGAGACTAATAATATCCTAAGGAACAAGTTGGAGGAAATTAATAGTGGCCTTCAACCCACATGGGAAGCTAGGGAGCAGAATGCTCCCTTCAGCTACCACCCCCTCCAATCAGAGGGATACTATGAGACAGCACATTGCAATAGTACATTGCGAATTGGCTACGGTTCTTCAGTGTCAAATGAAGCAGGAGGAGATGCAGGAACCTCAACCCAGAATGCCAGTGAATTCATGCATGGATGGATGGCCTAA 738 0.4566 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSSGMTKTLERYQRCSYAALEVHHQSANETQRRYQEYLKLKSKVQALQQNQRNFLGEDLEHLDIKELEQLEHQLDSSLKQIRSNKTQQTLEQLSDLQKKEEMLLETNNILRNKLEEINSGLQPTWEAREQNAPFSYHPLQSEGYYETAHCNSTLRIGYGSSVSNEAGGDAGTSTQNASEFMHGWMA 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2021g00008 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi2021g00008 245 MobiDBLite consensus disorder prediction 224 239 - -
Gabi2021g00008 245 Pfam K-box region 85 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi2021g00008 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi2021g00008 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi2021g00008 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi2021g00008 245 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Gabi2021g00008 245 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi2021g00008 245 FunFam MADS-box transcription factor 1 13 102 - -
Gabi2021g00008 245 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Gabi2021g00008 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi2021g00008 245 Coils Coil 152 175 - -
Gabi2021g00008 245 MobiDBLite consensus disorder prediction 224 245 - -
Gabi2021g00008 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi2021g00008 245 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Gabi2021g00008 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Gabi2021g00008 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi2021g00008 245 Coils Coil 123 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2021g00008 Gabi-Chr2021 76018 89193 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2021g00008 1 216 MADS-box Gene Family AT5G15800 65.315 3.67e-91 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi2021g00008 K-box 7.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2021g00008 K09264 - gmx:100811049 414.461