Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2021g00007 ATGGGCAGGGGGAAGGTGGAGCTGAAGAGGATTGAGAACAAGATAAACCGTCAAGTTACATTTGCAAAGAGAAGGAATGGGTTGCTCAAGAAGGCTTATGAGCTCTCTGTCCTCTGTGATGCTGAAGTTGCCCTCATTATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGCACCTCTAGCATGACCAAGACACTTGAACGGTATCAAAGATGCAGTTATGCAGCCTTGGAAGTGCACCACCAATCTGCAAATGAGACACAGAGGCGCTACCAAGAGTATCTCAAGCTGAAATCAAAAGTTCAGGCACTACAGCAAAACCAGAGAAACTTCCTTGGGGAAGATTTGGAGCACTTAGATATTAAGGAGCTTGAGCAGCTTGAACATCAACTGGACTCTTCCTTGAAGCAAATAAGGTCTAACAAGACACAACAAACGCTTGAACAACTCTCTGATTTACAAAAAAAGGAGGAGATGCTACTGGAGACTAATAATATCCTAAGGAACAAGTTGGAGGAAATTAATAGTGGCCTTCAACCCACATGGGAAGCTAGGGAGCAGAATGCTCCCTTCAGCTACCACCCCCTCCAATCAGAGGGATACTATGAGACAGCACATTGCAATAGTACATTGCGAATTGGCTACGGTTCTTCAGTGTCAAATGAAGCAGGAGGAGATGCAGGAACCTCAACCCAGAATGCCAGTGAATTCATGCATGGATGGATGGCCTAA 735 0.4544 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSSMTKTLERYQRCSYAALEVHHQSANETQRRYQEYLKLKSKVQALQQNQRNFLGEDLEHLDIKELEQLEHQLDSSLKQIRSNKTQQTLEQLSDLQKKEEMLLETNNILRNKLEEINSGLQPTWEAREQNAPFSYHPLQSEGYYETAHCNSTLRIGYGSSVSNEAGGDAGTSTQNASEFMHGWMA 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2021g00007 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi2021g00007 244 Coils Coil 122 145 - -
Gabi2021g00007 244 MobiDBLite consensus disorder prediction 223 238 - -
Gabi2021g00007 244 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Gabi2021g00007 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi2021g00007 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Gabi2021g00007 244 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi2021g00007 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi2021g00007 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi2021g00007 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi2021g00007 244 FunFam MADS-box transcription factor 1 13 101 - -
Gabi2021g00007 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi2021g00007 244 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi2021g00007 244 Coils Coil 151 174 - -
Gabi2021g00007 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi2021g00007 244 MobiDBLite consensus disorder prediction 223 244 - -
Gabi2021g00007 244 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677|GO:0046983
Gabi2021g00007 244 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2021g00007 Gabi-Chr2021 76018 89193 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2021g00007 1 215 MADS-box Gene Family AT5G15800 65.158 7.75e-93 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi2021g00007 K-box 7.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2021g00007 K09264 - gmx:100811049 419.083