Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2021g00006 ATGGGAAGGGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAATCGCCAGGTAACTTTCTCCAAAAGGAAAGCAGGGTTGCTCAAGAAAGCACACGAAATCTCTGTGCTATGTGATGCTGAGGTCGCTTTGATTGTCTTCTCCCAGAAAGGAAAGCTCTTTGAGTATGCCACTGATTCATGCATGGAGAAGATACTGGAACGCCATGAAAGGTATGCCTATGCAGAGAGACAGCTAGTAGAAAAAGAATCTGAGATACAGGGAAACTGGACCATTGAATATACTAGGCTCAAGGCAAAGATTGACCTTTTGCAAAGAAACCACAGTGTCATAATCTTGAATCCTTTCTTCAGGAACTACACGGGAGAAGATTTGGCTTCAATGAGCCTCAAAGAGCTTCAAAGACTGGAGCAGCAGTTAGATACTGCTCTCAAAAATATTCGTACACGCAGAAACCAACTCATGTACGAGGCAATTTCGGAGCTTCAGAAACAGGAGAAAGGGATAAAAGAGCAGAATAACATGCTCGAAAAGAAGATCAAGGAGAAAGAGAAGGCTACAGTACAGCAGGTTGCTCAATGGGAGCAGTCAAACTACAGGGTTGATACCTCTTTCTTACAACAGCAACCCCTTCCCACTTTGAACATCGGTGGCAATTACCATCAGGAAGCACCAGAACTGGGGAGGAACGAGCTTGACCTGACCCTGGAACCACTATATTCTAGCCACCTCCGATGCTTTTGA 747 0.4485 MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSQKGKLFEYATDSCMEKILERHERYAYAERQLVEKESEIQGNWTIEYTRLKAKIDLLQRNHSVIILNPFFRNYTGEDLASMSLKELQRLEQQLDTALKNIRTRRNQLMYEAISELQKQEKGIKEQNNMLEKKIKEKEKATVQQVAQWEQSNYRVDTSFLQQQPLPTLNIGGNYHQEAPELGRNELDLTLEPLYSSHLRCF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2021g00006 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi2021g00006 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi2021g00006 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi2021g00006 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi2021g00006 248 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Gabi2021g00006 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 179 - -
Gabi2021g00006 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi2021g00006 248 Pfam K-box region 84 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi2021g00006 248 Coils Coil 127 154 - -
Gabi2021g00006 248 ProSiteProfiles K-box domain profile. 88 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi2021g00006 248 Coils Coil 160 190 - -
Gabi2021g00006 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi2021g00006 248 FunFam Floral homeotic protein APETALA 1 13 68 - -
Gabi2021g00006 248 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Gabi2021g00006 248 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Gabi2021g00006 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2021g00006 Gabi-Chr2021 57061 62263 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2021g00006 1 248 MADS-box Gene Family AT1G26310 58.333 3.09e-97 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi2021g00006 K-box 6.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2021g00006 K09264 - gmx:100819745 389.037