Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2019g00009 ATGGCTGAAACTCACTCTCAAGCTCCCACACCCACTCTTGGCCCCTTCATAAGCATACAACAACAACATGAAGAACAAGGTAAAGGTCTCGATTGGATGGTACTTGTGGCAGCAATTATATGTGCCTTCCTTTGTGCTCTTGGCCTTAACACTATGTTACAATGTGTCTTTCAATGTGCTAGTCGTGTCCTCACTGAGCCTCTACAATGGTTTGCTTCTCGGAGGCTCAATTCTGGGCTCAAGAGGAAAGAAATGGTAGCTTTGCCAACCTCAACTTATAGCAACACATCTGGGTCTACATCTTCACCTTCTAATTGTGTCATTTGCTTAGCAGAGTTCTCTATTGGGGACCAGATAAGGTTCCTCCCAAATTGCAATCACCATTTTCATGTGGTTTGCATTGACAAGTGGTTGCTCTCTCATTCTTCTTGTCCTACTTGCAGACACCTACTTAAGTCTAGTGATTCTGCTCACTCCTTACTTATTGCCATAGCTCAGTGA 501 0.4391 MAETHSQAPTPTLGPFISIQQQHEEQGKGLDWMVLVAAIICAFLCALGLNTMLQCVFQCASRVLTEPLQWFASRRLNSGLKRKEMVALPTSTYSNTSGSTSSPSNCVICLAEFSIGDQIRFLPNCNHHFHVVCIDKWLLSHSSCPTCRHLLKSSDSAHSLLIAIAQ 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2019g00009 166 CDD RING-H2_EL5-like 106 148 - -
Gabi2019g00009 166 PANTHER RING-H2 FINGER PROTEIN ATL78 8 154 IPR044602 GO:0016567|GO:0016740
Gabi2019g00009 166 SUPERFAMILY RING/U-box 105 154 - -
Gabi2019g00009 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 153 IPR013083 -
Gabi2019g00009 166 Pfam Ring finger domain 105 148 IPR001841 -
Gabi2019g00009 166 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Gabi2019g00009 166 SMART ring_2 106 147 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2019g00009 Gabi-Chr2019 79153 79653 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2019g00009 31 151 C3H Transcription Factor Family AT1G20823 43.846 9.99e-31 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2019g00009 - K19040 gmx:100779286 234.187