Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2019g00005 ATGAAAATCTCTTCATCTGAGAGAAGAAACCATAGAGCACTTGGCGATATTGGATATTTTTATGATTCTTTAAGGGGTTTCGGTGCCCAATTACTTGAAAATAACAAGAAGGAGGCTTGTGCTGGTGTAGCTAGACCTCCTCCTCCTCCAGTTGCTGATGGAGTTTTTTCAGTGACTGAAAGAGTGGGACAGATGATAATCAGTGCAAAAACAAAGCCTGAAGAAGACATTGAAATGAGCTCAGAAAGAGAGGTCAAGAAAGACAAGGAAGAAGATTCCAACTCCGGAAAGAAATCACGAGCTTTTACTTCTGTGCTCACAGCTCGAAGCAAGGCGGCATGCGGTGTGACTAACAAACCGAAGGTGGAGATTGTTGACATTGACGCTGGTGATGTTGGCAATGATCTTGCTGCTGTGGAATATGTTGAAGACATATACAATTTCTACAAGGAAGTGGAGAACGAGAGCCGTCACCATCACTACATGAACACACAACACCAACCTGAAATAAAGAAAAGGATGAGAAAAGTACTCGTGGATTGGCTTATGGATGTTCACTCCAAGTTTGACCTTTCGCTTGAAACCCTTTATCTTACAATCAATATAATTGATCGGTTCCTAGCAGTCAAGCCTGTGCCAAAGAGGGTACTGCAATTGGTTGGTGTGAGTGCAATGCTCATAGCATCCAAGTATGAAGAAATCTGGGCCCCTCAGGTTAATGAATTTGTCTTCCTTTCAGATAGAGCTTACACTCATGAACAGATTCTGGGCATGGAGAAAATCAAACTTGGCACGTTGGAATGGAATTTGACTGTTCCTACACCATTTGTTTTCCTAGTTCGTTTTATCAAGGCATCAATTCCAGATATGATGTTGGAAAATATGGCCCATTTTCTTTGTGAGTTGGGAATGATGCATTATGTCACCTTAGTTAAGTATTGCCCATCAATGGTGGCTGCCTCAGCAGTCTTTGCAGCCAGATGCACTCTCAATAAGAGCCCCGTTTGGAATGAGACACTCAAGCTACACACGGGTTACTCACAAGAACAACTTAGGGATTGTGCAAGACTATTGGTAAAATTTCATTCCACTGTTGGAAATGGAAAGCATAAAGTTGTGCACAGAATATATTCGGATCCTCAAAGAGGGGCTGTTGCTATCCTCCCACCGGCTAAAAGTCTTTTGCTGAAAGGTTGTACATCAATTTGA 1209 0.4218 MKISSSERRNHRALGDIGYFYDSLRGFGAQLLENNKKEACAGVARPPPPPVADGVFSVTERVGQMIISAKTKPEEDIEMSSEREVKKDKEEDSNSGKKSRAFTSVLTARSKAACGVTNKPKVEIVDIDAGDVGNDLAAVEYVEDIYNFYKEVENESRHHHYMNTQHQPEIKKRMRKVLVDWLMDVHSKFDLSLETLYLTINIIDRFLAVKPVPKRVLQLVGVSAMLIASKYEEIWAPQVNEFVFLSDRAYTHEQILGMEKIKLGTLEWNLTVPTPFVFLVRFIKASIPDMMLENMAHFLCELGMMHYVTLVKYCPSMVAASAVFAARCTLNKSPVWNETLKLHTGYSQEQLRDCARLLVKFHSTVGNGKHKVVHRIYSDPQRGAVAILPPAKSLLLKGCTSI 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2019g00005 402 SMART Cyclin_C_2 273 391 IPR004367 -
Gabi2019g00005 402 FunFam G2/mitotic-specific cyclin 157 267 - -
Gabi2019g00005 402 SMART cyclin_7 180 264 IPR013763 -
Gabi2019g00005 402 SMART cyclin_7 277 360 IPR013763 -
Gabi2019g00005 402 Pfam Cyclin, N-terminal domain 144 271 IPR006671 -
Gabi2019g00005 402 FunFam G2/mitotic-specific cyclin-1 268 386 - -
Gabi2019g00005 402 CDD CYCLIN_AtCycB-like_rpt2 273 390 - -
Gabi2019g00005 402 MobiDBLite consensus disorder prediction 71 97 - -
Gabi2019g00005 402 PANTHER CYCLINS 92 370 IPR039361 -
Gabi2019g00005 402 MobiDBLite consensus disorder prediction 69 99 - -
Gabi2019g00005 402 ProSitePatterns Cyclins signature. 175 206 IPR006671 -
Gabi2019g00005 402 Pfam Cyclin, C-terminal domain 273 390 IPR004367 -
Gabi2019g00005 402 Gene3D - 144 386 - -
Gabi2019g00005 402 SUPERFAMILY Cyclin-like 133 270 IPR036915 -
Gabi2019g00005 402 SUPERFAMILY Cyclin-like 272 393 IPR036915 -
Gabi2019g00005 402 PIRSF Cyclin_A_B_D_E 24 401 IPR046965 GO:0016538|GO:0044772
Gabi2019g00005 402 Gene3D - 158 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2019g00005 Gabi-Chr2019 25089 26953 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2019g00005 104 395 Core Cell Cycle Gene Families AT4G37490 58.923 2.80e-123 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2019g00005 K21777 - gmx:547919 506.908