Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2017g00007 ATGATTATATTTCCTGCATCTGTAACTGTAAGGATGGCTGTGGCGAGTGTGCCTGCAACAACTCAACGGATTGTGGTTGATGAGCCAATCGATTTTGCTGGGGGAGAAGTTTTAGATGAGCCTAATCTTGCTTTGGTTGATGAGCCAATCTATTTTGCTGTGGCAAAAGATGTGAAAGAGAGCAAATTGAATCTGATATGGACAATACAGCACTCTGGAGGAAAGAGGATTTGCATCCTTCACGTTCATGTGCCTGCAACAATGATCCCCATGATGGGTGCTAAATTTTCTGCAAGTCAAATGAAAGATCAGGAAGTTCGAGCATACCGGGAAATTGAAAGGCAAAGCATGCATAAGATTCTGGATGAATATCTTCTTATCTGTCAACGGATGGGGGTGCGAGCAGAGAAACTGCATATTGAAATGGATAGCATTGAAAAAGGAATTTTAGAACTTGTCTCCCAGCATGGCATCCGAAAGCTTGTTATGGGAGCAGCATCTGATAGGTACCATTCTAGGAGAATGATGGACCTCAGATCTAAGAAAGCCATATATGTATGTGACCACGCTCCACCTTCTTGTCATATATATTTTATCTGCAAAGGACACCTTATATACACAAGGGATCGCAGTTTGGATGAAGGTAATGTAGAGGTTGCATCTCCTTCGGTGCAGCAAGTTCCAAACTCTGTGAGACCTTTGAGATCTCAAACGATTGCACTGGGGCAAAATCGTCAGGCAAATTTAACAAATCCTGTTCAAGAGTTATTTCGCAGAGTAAGGTCTGCCAATGATGGACATCGAGTGAGCATTTCTTCTCCAGATAACAGTGAAGTGTTTTCAACTCCACGTAGCAGGATGGTTACAGAAGTAAGTTCTGATGAATCAGATAGGCTGTCGAGGATGATGAGCCCTTCAGGTTTGTCAACATGTTCTGATAGTACAATTGATCCAGCATTGACCCCAAATTTGATTCCTGAGAGCAGTGAGCATGTATTAAACTTGACTTTGAGTCGCGTGAATAAAGAGGATGTTCGTCATCCATCTCCTCCTAGTGTACTGGATGGTGGAAGGAATGATACTCTCTACGATCAACTTGAACAGGCTATGGCTGAGTCTGCGAATGCTACACGAAATGCATATCAAGAAACTTTTAGGCGTGGGAAAGCTGAAAAAGATGCCTTGGAAGCTATACGCAGGGCTAAAGCTTCTGAAAGCTTATATACAGAGGAGTTGAACCTGAGGAAAATGGTGGAGGAAGAACTGAAAAACCAAAGAGAAGAACTTGATAGTATGAAGAGCCAGAGAGACAAGGTTAAGGATGAATTCCAACTTACCCTTGATCAGAAGTCATCACTAGAGAGTCAAATTGCATCATTGGAACTTACGATAAAGGAGTTGGAGCAGAAGATTATATCTGCTGTGGAACTGTTACAAAGCTATAAGAATGAACGAGATGAGTTGCAGATTCAACGTGATAATGCATTGAGAGATGCTGAGGAGTTGAGGAAAAAACAAGGAGAGGCCTCAAGCACCCACATGCCTCAATTGTTCGCAGAATTCTCTTTTTCAGAGATTGAAGAAGCAACAAATAACTTCAGTCCATCCCTAAAAGTAGGAGAAGGTGGATATGGAAGTATATTTAAAGGTATCCTGCGTCACACCGAGGTGGCTATAAAATTGTTGCACGCCAGCAGCTTGCAAGGACCCATGGAGTTTCAACAGGAGGTTGATGTATTGAGCAAGCTAAGGCATCCCAATCTTATCACACTTATAGGAGCCTGCCCAGAATCTTGGACTCTTATCTATGAGTATTTACCTAATGGAAGCCTTGAAGACCGTCTTGCCTGCAAGGATAATGCTCCTCCATTATCATGGCAAGCTCGAACTCGCATTGCTGCAGAACTGTGCTCTGCTCTCATCTTCCTCCATTCCTGTAAACCTCACAGCATAGTGCATGGTGACGTAAAACCCTCCAATATTCTCCTTGATGCGAACCTTGTTAGTAAGCTTAGTGACTTTGGAATCTGTCGCATATTATCTCATCACAATTATAGTAATACTGCAACACAGTTTTGGAGAACTGACCCGAAGGGAACTTTTGTCTACATGGATCCTGAATTCCTTGCTTCAGGGGAACTTACTCAAAAGTCAGATGTTTATTCATTTGGAATCATATTATTAAGATTGTTGACTGGGAGACCAGCTTTGGGAATAACAAAGGAAGTGCAATATGCATTAGATACCGGAAAGTTGAAATCGTTATTGGATCCTTTGGCTGGAGACTGGCCATTTGTGCAGGCTGAACAGTTGGCTCACTTGGCTTTGAGGTGTTGTGAGATGAACAGAAGAAGCCGGCCAGACCTTAGTTCAGATGTCTGGAGGATACTGAATTCAATGAGGGCTTCTTCTGGAGGCACAAACTCCTTTGGACTAAGTTCTGAAGGGCTTTGTGAACCTCCTTCATATTTTATTTGTCCAATCTTCCAGGAAGTCATGCGAGATCCACATGTAGCTCCGGATGGTTTTACTTATGAAGCTGAGGCTATAAGAGGATGGCTTGACAGTGGTCATGACACTTCACCAATGACAAATTTGCAGCTTGCACATCACAATCTTGTTCCCAACCGTGCTCTTCGCTCTGCAATCCAGGACTGGCTTCAAAGTAGCTGA 2673 0.4287 MIIFPASVTVRMAVASVPATTQRIVVDEPIDFAGGEVLDEPNLALVDEPIYFAVAKDVKESKLNLIWTIQHSGGKRICILHVHVPATMIPMMGAKFSASQMKDQEVRAYREIERQSMHKILDEYLLICQRMGVRAEKLHIEMDSIEKGILELVSQHGIRKLVMGAASDRYHSRRMMDLRSKKAIYVCDHAPPSCHIYFICKGHLIYTRDRSLDEGNVEVASPSVQQVPNSVRPLRSQTIALGQNRQANLTNPVQELFRRVRSANDGHRVSISSPDNSEVFSTPRSRMVTEVSSDESDRLSRMMSPSGLSTCSDSTIDPALTPNLIPESSEHVLNLTLSRVNKEDVRHPSPPSVLDGGRNDTLYDQLEQAMAESANATRNAYQETFRRGKAEKDALEAIRRAKASESLYTEELNLRKMVEEELKNQREELDSMKSQRDKVKDEFQLTLDQKSSLESQIASLELTIKELEQKIISAVELLQSYKNERDELQIQRDNALRDAEELRKKQGEASSTHMPQLFAEFSFSEIEEATNNFSPSLKVGEGGYGSIFKGILRHTEVAIKLLHASSLQGPMEFQQEVDVLSKLRHPNLITLIGACPESWTLIYEYLPNGSLEDRLACKDNAPPLSWQARTRIAAELCSALIFLHSCKPHSIVHGDVKPSNILLDANLVSKLSDFGICRILSHHNYSNTATQFWRTDPKGTFVYMDPEFLASGELTQKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKSLLDPLAGDWPFVQAEQLAHLALRCCEMNRRSRPDLSSDVWRILNSMRASSGGTNSFGLSSEGLCEPPSYFICPIFQEVMRDPHVAPDGFTYEAEAIRGWLDSGHDTSPMTNLQLAHHNLVPNRALRSAIQDWLQSS 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2017g00007 890 Coils Coil 359 379 - -
Gabi2017g00007 890 Pfam U-box domain 821 889 IPR003613 GO:0004842|GO:0016567
Gabi2017g00007 890 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 505 605 - -
Gabi2017g00007 890 CDD STK_N 49 202 - -
Gabi2017g00007 890 MobiDBLite consensus disorder prediction 298 323 - -
Gabi2017g00007 890 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 71 174 - -
Gabi2017g00007 890 Coils Coil 408 442 - -
Gabi2017g00007 890 ProSitePatterns Protein kinases ATP-binding region signature. 539 560 IPR017441 GO:0005524
Gabi2017g00007 890 PANTHER OS02G0152300 PROTEIN 50 885 - -
Gabi2017g00007 890 MobiDBLite consensus disorder prediction 264 323 - -
Gabi2017g00007 890 Gene3D Transferase(Phosphotransferase) domain 1 606 809 - -
Gabi2017g00007 890 ProSitePatterns Serine/Threonine protein kinases active-site signature. 651 663 IPR008271 GO:0004672|GO:0006468
Gabi2017g00007 890 SUPERFAMILY Protein kinase-like (PK-like) 510 791 IPR011009 -
Gabi2017g00007 890 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 818 890 IPR013083 -
Gabi2017g00007 890 MobiDBLite consensus disorder prediction 266 289 - -
Gabi2017g00007 890 Gene3D Phosphorylase Kinase; domain 1 502 605 - -
Gabi2017g00007 890 SMART Ubox_2 823 886 IPR003613 GO:0004842|GO:0016567
Gabi2017g00007 890 ProSiteProfiles Protein kinase domain profile. 533 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2017g00007 890 Gene3D HUPs 57 195 IPR014729 -
Gabi2017g00007 890 Coils Coil 450 505 - -
Gabi2017g00007 890 SUPERFAMILY RING/U-box 814 888 - -
Gabi2017g00007 890 Pfam Protein kinase domain 538 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2017g00007 890 SMART serkin_6 533 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2017g00007 890 ProSiteProfiles U-box domain profile. 819 890 IPR003613 GO:0004842|GO:0016567
Gabi2017g00007 890 CDD RING-Ubox_WDSUB1-like 821 876 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2017g00007 Gabi-Chr2017 141917 148019 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2017g00007 37 888 U-box Gene Family AT2G45910 54.503 0.0 914
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gabi2017g00007 Pkinase 6.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2017g00007 - - gmx:100807515 1377.46