Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2017g00006 ATGATTATATTTCCTGCATCTGTAACTGTAAGGATGGCTGTGGCGAGTGTGCCTGCAACAACTCAACGGATTGTGGTTGATGAGCCAATCGATTTTGCTGGGGGAGAAGTTTTAGATGAGCCTAATCTTGCTTTGGTTGATGAGCCAATCTATTTTGCTGTGGCAAAAGATGTGAAAGAGAGCAAATTGAATCTGATATGGACAATACAGCACTCTGGAGGAAAGAGGATTTGCATCCTTCACGTTCATGTGCCTGCAACAATGATCCCCATGATGGGTGCTAAATTTTCTGCAAGTCAAATGAAAGATCAGGAAGTTCGAGCATACCGGGAAATTGAAAGGCAAAGCATGCATAAGATTCTGGATGAATATCTTCTTATCTGTCAACGGATGGGGGTGCGAGCAGAGAAACTGCATATTGAAATGGATAGCATTGAAAAAGGAATTTTAGAACTTGTCTCCCAGCATGGCATCCGAAAGCTTGTTATGGGAGCAGCATCTGATAGGTACCATTCTAGGAGAATGATGGACCTCAGATCTAAGAAAGCCATATATGTATGTGACCACGCTCCACCTTCTTGTCATATATATTTTATCTGCAAAGGACACCTTATATACACAAGGGATCGCAGTTTGGATGAAGGTAATGTAGAGGTTGCATCTCCTTCGGTGCAGCAAGTTCCAAACTCTGTGAGACCTTTGAGATCTCAAACGATTGCACTGGGGCAAAATCGTCAGGCAAATTTAACAAATCCTGTTCAAGAGTTATTTCGCAGAGTAAGGTCTGCCAATGATGGACATCGAGTGAGCATTTCTTCTCCAGATAACAGTGAAGTGTTTTCAACTCCACGTAGCAGGATGGTTACAGAAGTAAGTTCTGATGAATCAGATAGGCTGTCGAGGATGATGAGCCCTTCAGGTTTGTCAACATGTTCTGATAGTACAATTGATCCAGCATTGACCCCAAATTTGATTCCTGAGAGCAGTGAGCATGTATTAAACTTGACTTTGAGTCGCGTGAATAAAGAGGATGTTCGTCATCCATCTCCTCCTAGTGTACTGCAGGATGGTGGAAGGAATGATACTCTCTACGATCAACTTGAACAGGCTATGGCTGAGTCTGCGAATGCTACACGAAATGCATATCAAGAAACTTTTAGGCGTGGGAAAGCTGAAAAAGATGCCTTGGAAGCTATACGCAGGGCTAAAGCTTCTGAAAGCTTATATACAGAGGAGTTGAACCTGAGGAAAATGGTGGAGGAAGAACTGAAAAACCAAAGAGAAGAACTTGATAGTATGAAGAGCCAGAGAGACAAGGTTAAGGATGAATTCCAACTTACCCTTGATCAGAAGTCATCACTAGAGAGTCAAATTGCATCATTGGAACTTACGATAAAGGAGTTGGAGCAGAAGATTATATCTGCTGTGGAACTGTTACAAAGCTATAAGAATGAACGAGATGAGTTGCAGATTCAACGTGATAATGCATTGAGAGATGCTGAGGAGTTGAGGAAAAAACAAGGAGAGGCCTCAAGCACCCACATGCCTCAATTGTTCGCAGAATTCTCTTTTTCAGAGATTGAAGAAGCAACAAATAACTTCAGTCCATCCCTAAAAGTAGGAGAAGGTGGATATGGAAGTATATTTAAAGGTATCCTGCGTCACACCGAGGTGGCTATAAAATTGTTGCACGCCAGCAGCTTGCAAGGACCCATGGAGTTTCAACAGGAGGTTGATGTATTGAGCAAGCTAAGGCATCCCAATCTTATCACACTTATAGGAGCCTGCCCAGAATCTTGGACTCTTATCTATGAGTATTTACCTAATGGAAGCCTTGAAGACCGTCTTGCCTGCAAGGATAATGCTCCTCCATTATCATGGCAAGCTCGAACTCGCATTGCTGCAGAACTGTGCTCTGCTCTCATCTTCCTCCATTCCTGTAAACCTCACAGCATAGTGCATGGTGACGTAAAACCCTCCAATATTCTCCTTGATGCGAACCTTGTTAGTAAGCTTAGTGACTTTGGAATCTGTCGCATATTATCTCATCACAATTATAGTAATACTGCAACACAGTTTTGGAGAACTGACCCGAAGGGAACTTTTGTCTACATGGATCCTGAATTCCTTGCTTCAGGGGAACTTACTCAAAAGTCAGATGTTTATTCATTTGGAATCATATTATTAAGATTGTTGACTGGGAGACCAGCTTTGGGAATAACAAAGGAAGTGCAATATGCATTAGATACCGGAAAGTTGAAATCGTTATTGGATCCTTTGGCTGGAGACTGGCCATTTGTGCAGGCTGAACAGTTGGCTCACTTGGCTTTGAGGTGTTGTGAGATGAACAGAAGAAGCCGGCCAGACCTTAGTTCAGATGTCTGGAGGATACTGAATTCAATGAGGGCTTCTTCTGGAGGCACAAACTCCTTTGGACTAAGTTCTGAAGGGCTTTGTGAACCTCCTTCATATTTTATTTGTCCAATCTTCCAGGAAGTCATGCGAGATCCACATGTAGCTCCGGATGGTTTTACTTATGAAGCTGAGGCTATAAGAGGATGGCTTGACAGTGGTCATGACACTTCACCAATGACAAATTTGCAGCTTGCACATCACAATCTTGTTCCCAACCGTGCTCTTCGCTCTGCAATCCAGGACTGGCTTCAAAGTAGCTGA 2676 0.429 MIIFPASVTVRMAVASVPATTQRIVVDEPIDFAGGEVLDEPNLALVDEPIYFAVAKDVKESKLNLIWTIQHSGGKRICILHVHVPATMIPMMGAKFSASQMKDQEVRAYREIERQSMHKILDEYLLICQRMGVRAEKLHIEMDSIEKGILELVSQHGIRKLVMGAASDRYHSRRMMDLRSKKAIYVCDHAPPSCHIYFICKGHLIYTRDRSLDEGNVEVASPSVQQVPNSVRPLRSQTIALGQNRQANLTNPVQELFRRVRSANDGHRVSISSPDNSEVFSTPRSRMVTEVSSDESDRLSRMMSPSGLSTCSDSTIDPALTPNLIPESSEHVLNLTLSRVNKEDVRHPSPPSVLQDGGRNDTLYDQLEQAMAESANATRNAYQETFRRGKAEKDALEAIRRAKASESLYTEELNLRKMVEEELKNQREELDSMKSQRDKVKDEFQLTLDQKSSLESQIASLELTIKELEQKIISAVELLQSYKNERDELQIQRDNALRDAEELRKKQGEASSTHMPQLFAEFSFSEIEEATNNFSPSLKVGEGGYGSIFKGILRHTEVAIKLLHASSLQGPMEFQQEVDVLSKLRHPNLITLIGACPESWTLIYEYLPNGSLEDRLACKDNAPPLSWQARTRIAAELCSALIFLHSCKPHSIVHGDVKPSNILLDANLVSKLSDFGICRILSHHNYSNTATQFWRTDPKGTFVYMDPEFLASGELTQKSDVYSFGIILLRLLTGRPALGITKEVQYALDTGKLKSLLDPLAGDWPFVQAEQLAHLALRCCEMNRRSRPDLSSDVWRILNSMRASSGGTNSFGLSSEGLCEPPSYFICPIFQEVMRDPHVAPDGFTYEAEAIRGWLDSGHDTSPMTNLQLAHHNLVPNRALRSAIQDWLQSS 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2017g00006 891 SMART serkin_6 534 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2017g00006 891 CDD STK_N 49 202 - -
Gabi2017g00006 891 ProSiteProfiles U-box domain profile. 820 891 IPR003613 GO:0004842|GO:0016567
Gabi2017g00006 891 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 71 174 - -
Gabi2017g00006 891 Gene3D Phosphorylase Kinase; domain 1 503 606 - -
Gabi2017g00006 891 Coils Coil 451 506 - -
Gabi2017g00006 891 CDD RING-Ubox_WDSUB1-like 822 877 - -
Gabi2017g00006 891 MobiDBLite consensus disorder prediction 341 360 - -
Gabi2017g00006 891 MobiDBLite consensus disorder prediction 266 289 - -
Gabi2017g00006 891 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 506 606 - -
Gabi2017g00006 891 ProSitePatterns Protein kinases ATP-binding region signature. 540 561 IPR017441 GO:0005524
Gabi2017g00006 891 SUPERFAMILY Protein kinase-like (PK-like) 511 792 IPR011009 -
Gabi2017g00006 891 SUPERFAMILY RING/U-box 815 889 - -
Gabi2017g00006 891 Gene3D HUPs 57 195 IPR014729 -
Gabi2017g00006 891 ProSitePatterns Serine/Threonine protein kinases active-site signature. 652 664 IPR008271 GO:0004672|GO:0006468
Gabi2017g00006 891 MobiDBLite consensus disorder prediction 264 324 - -
Gabi2017g00006 891 Pfam U-box domain 822 890 IPR003613 GO:0004842|GO:0016567
Gabi2017g00006 891 Coils Coil 360 380 - -
Gabi2017g00006 891 Pfam Protein kinase domain 539 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2017g00006 891 MobiDBLite consensus disorder prediction 298 324 - -
Gabi2017g00006 891 ProSiteProfiles Protein kinase domain profile. 534 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2017g00006 891 SMART Ubox_2 824 887 IPR003613 GO:0004842|GO:0016567
Gabi2017g00006 891 Gene3D Transferase(Phosphotransferase) domain 1 607 810 - -
Gabi2017g00006 891 Coils Coil 409 443 - -
Gabi2017g00006 891 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 819 891 IPR013083 -
Gabi2017g00006 891 PANTHER OS02G0152300 PROTEIN 50 886 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2017g00006 Gabi-Chr2017 141917 148019 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2017g00006 37 889 U-box Gene Family AT2G45910 54.439 0.0 914
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gabi2017g00006 Pkinase 6.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2017g00006 - - gmx:100807515 1372.84