Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2017g00001 ATGAAAATCCCTTGTTGTTCGGTTTGTCAAACGCGGTACAACGAAGAGGAGCGAGTACCGCTTCTGCTTCAATGCGGCCACGGTTTCTGCAAAGAGTGTCTTTCTAGAATGTTCTCGGCTTCTCCTGATGCTACGCTCACGTGTCCGCGCTGCCGCCACGTGTCCACCGTCGGCAACTCCGTTCAAGCGCTGCGCAAGAACTTCGCCGTTCTCGCGCTCATCCACTCCGCCGCCGCGAACACATCAGCTGCCGCTGGCGGAGGGTCGAATTTTGACTGTGACTACACTGATGATGAGGAAGATGGTGACGGTGATGGTGATGGCGATGGTGATGAGGAGGATGAGGAGAAGCGGCGCAGGTTCATCCGTGGGTCGCAGACTTCGAGCTCCGGTGGGTGCGAGCCGGTGATCGATGTTGGGGCGCATCAGGATTTGAAGCTGGTGAGGCGGATTGGGGAAGGGAGGAGAGCTGGCGTGGAGATGTGGACGGCGGTGATTGGAAGCAGCGGCGGTGGGAGGTGTCGGCACCATGTGGCGGTTAAGAAGGTGGCGATAACGGAGGGGATGGATTTGGATTGGGTGCAGGGGAAGCTTGAGGATTTGCGCAAGGCTTCGATGTGGTGTAGGAATGTGTGCACTTTTCATGGAGCAATGAAGATGGAAGAGAGTTTGTGCCTTGTGATGGACAGGTGTTATGGATCGGTTCAGTCTGAGATGCAGCGCAATGAGGGGAGGCTCACTTTGGAGCAAGTCCTAAGATATGGGTCAGACATTGCACGAGGAGTTGTTGAGCTTCATGCTGCAGGTGTTGTTTGCATGAATTTAAAACCATCCAATCTTCTTCTTGATGCAAATGGTCATGCTGTGGTTTCTGATTATGGACTTGCTACACTTCTGAAGAAGCCTTCCTGTCGGAAGGCTCAACCAGAGTGTGACTCCTCAAAGATCCATTCCTGTATGGAATGTATTATGCTGAGCCCACATTACACCGCACCTGAAGCTTGGGAACCTGTGAAGAAGTCATTGAATTTGTTCTGGGATGATGGAATAGGTATATCTTCCGAATCAGATGCCTGGAGTTTTGGTTGTACATTGGTGGAGATGTGCACGGGTGCCATTCCTTGGGCAGGTTTAAGTGCAGAGGAAATCTATCGATCAGTTGTCAAGGCAAAAAAACTTCCTCCGCAGTATGCTAGTGTGGTTGGTGGTGGAATTCCGAGGGAATTGTGGAAGATGATTGGAGAGTGCTTGCAATTCAAGCCATCTAAAAGGCCTACTTTTAATGCAATGCTAGCAATTTTTCTCCGTCATTTGCAGGAAATACCCCGCAGCCCTCCGGCAAGCCCTGATAATGACTTTTTTAAGGGCTCTGTGTCAAATGTGACGGAGCCTTCTCCAGTACCTGAATTAGAAGTTCTTCAGGAAAACCCAAACCATCTTCATCGACTTGTGTCTGAAGGGGATGCCACAGGTGTTAGAGATCTTCTTGCAAAGGCCACTGCATCAGAAAATGGCAGCAGCTACATATCTTCTCTATTGGAAGCTCAAAATGCTGATGGGCAAACGGCTCTCCACTTAGCTTGTAGACGCGGTAGTGCAGAACTTGTTGAGACAATTCTGGAGTATGGAGAAGCAAATGTTGATGTTTTAGACAAAGATGGAGATCCTCCTCTTGTTTTTGCATTAGCAGCTGGATCCCCAGAATGTGTTCGTAGCCTTATCAGAAGAAATGCTAATGTGAGGTCAAGATTAAGAGATGGCGTTGGCCCATCAGTAGCTCACGTTTGTGCCTATCACGGCCAACCAGATTGTATGCGAGAATTACTATTAGCTGGAGCTGATCCTAACGCAGTGGATGACGAAGGTGAATCTGTACTGCATAGGGCAGTTGCCAAGAAGTACACAGACTGTGCTCTTGTGATATTGGAGAATGGAGGCTGTAGATCAATGGCCATCTTGAATTCAAAGAATCTGACACCACTGCACTTGTGTGTGGCAACATGGAATGTTGCTGTTGTAAAGAGATGGGTAGAAGTTGCAACTTCTGATGAGATTGCTGAAGCAATTGACATACCAAGCCCAATTGGCACTGCCTTGTGCATGGCTGCTGCTTCTAAGAAAGACCATGAAAGTGGTATCCAAAACTTCATCGCTTGA 2157 0.4905 MKIPCCSVCQTRYNEEERVPLLLQCGHGFCKECLSRMFSASPDATLTCPRCRHVSTVGNSVQALRKNFAVLALIHSAAANTSAAAGGGSNFDCDYTDDEEDGDGDGDGDGDEEDEEKRRRFIRGSQTSSSGGCEPVIDVGAHQDLKLVRRIGEGRRAGVEMWTAVIGSSGGGRCRHHVAVKKVAITEGMDLDWVQGKLEDLRKASMWCRNVCTFHGAMKMEESLCLVMDRCYGSVQSEMQRNEGRLTLEQVLRYGSDIARGVVELHAAGVVCMNLKPSNLLLDANGHAVVSDYGLATLLKKPSCRKAQPECDSSKIHSCMECIMLSPHYTAPEAWEPVKKSLNLFWDDGIGISSESDAWSFGCTLVEMCTGAIPWAGLSAEEIYRSVVKAKKLPPQYASVVGGGIPRELWKMIGECLQFKPSKRPTFNAMLAIFLRHLQEIPRSPPASPDNDFFKGSVSNVTEPSPVPELEVLQENPNHLHRLVSEGDATGVRDLLAKATASENGSSYISSLLEAQNADGQTALHLACRRGSAELVETILEYGEANVDVLDKDGDPPLVFALAAGSPECVRSLIRRNANVRSRLRDGVGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAVAKKYTDCALVILENGGCRSMAILNSKNLTPLHLCVATWNVAVVKRWVEVATSDEIAEAIDIPSPIGTALCMAAASKKDHESGIQNFIA 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2017g00001 718 SUPERFAMILY Ankyrin repeat 477 674 IPR036770 -
Gabi2017g00001 718 FunFam E3 ubiquitin-protein ligase KEG 2 81 - -
Gabi2017g00001 718 Pfam Ankyrin repeats (3 copies) 501 581 IPR002110 GO:0005515
Gabi2017g00001 718 ProSiteProfiles Ankyrin repeat region circular profile. 519 543 - -
Gabi2017g00001 718 FunFam E3 ubiquitin-protein ligase KEG 458 689 - -
Gabi2017g00001 718 ProSiteProfiles Ankyrin repeat profile. 588 620 IPR002110 GO:0005515
Gabi2017g00001 718 MobiDBLite consensus disorder prediction 94 112 - -
Gabi2017g00001 718 SUPERFAMILY RING/U-box 5 58 - -
Gabi2017g00001 718 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Gabi2017g00001 718 MobiDBLite consensus disorder prediction 94 137 - -
Gabi2017g00001 718 Pfam Protein kinase domain 175 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2017g00001 718 ProSiteProfiles Protein kinase domain profile. 145 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2017g00001 718 CDD RING-HC_KEG-like 3 59 - -
Gabi2017g00001 718 FunFam E3 ubiquitin-protein ligase KEG 232 448 - -
Gabi2017g00001 718 Pfam RING-type zinc-finger 6 49 IPR027370 -
Gabi2017g00001 718 ProSiteProfiles Ankyrin repeat profile. 519 543 IPR002110 GO:0005515
Gabi2017g00001 718 ProSiteProfiles Ankyrin repeat profile. 553 585 IPR002110 GO:0005515
Gabi2017g00001 718 SUPERFAMILY Protein kinase-like (PK-like) 141 467 IPR011009 -
Gabi2017g00001 718 Gene3D - 472 587 IPR036770 -
Gabi2017g00001 718 ProSiteProfiles Zinc finger RING-type profile. 6 52 IPR001841 -
Gabi2017g00001 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 84 IPR013083 -
Gabi2017g00001 718 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 1 714 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Gabi2017g00001 718 Gene3D - 588 714 IPR036770 -
Gabi2017g00001 718 Gene3D Transferase(Phosphotransferase) domain 1 231 452 - -
Gabi2017g00001 718 SMART ANK_2a 588 617 IPR002110 GO:0005515
Gabi2017g00001 718 SMART ANK_2a 553 582 IPR002110 GO:0005515
Gabi2017g00001 718 SMART ANK_2a 656 687 IPR002110 GO:0005515
Gabi2017g00001 718 SMART ANK_2a 519 549 IPR002110 GO:0005515
Gabi2017g00001 718 SMART ANK_2a 621 652 IPR002110 GO:0005515
Gabi2017g00001 718 SMART ring_2 6 51 IPR001841 -
Gabi2017g00001 718 Pfam Ankyrin repeats (many copies) 591 638 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2017g00001 Gabi-Chr2017 49134 55674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2017g00001 210 466 MAP Kinase Kinase Kinase AT1G53570 26.316 3.63e-18 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Gabi2017g00001 Pkinase 1.1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2017g00001 K16279 - gmx:100782956 1263.06