Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2012g00020 ATGGGAGACGGCACTGCTACCACCGCCGGCAACCGCTCCAACAACAACAGCAACAAGCCAGAGTGGCTGCAACAGTATGATCTTATAGGGAAGATTGGGGAAGGCACCTACGGTCTCGTCTTCCTTGCTCGGATCAAGTCTTCCACCAATCGCGGAAAATCCATCGCCATCAAGAAATTCAAGCAATCTAAGGACGGCGATGGTGTCTCTCCCACCGCCATCCGTGAAATCATGTTACTGAGGGAGATAACACACGAGAATGTTGTGAAGCTTGTGAATGTTCACATCAATCATGTGGACATGTCTCTGTATCTAGCTTTCGATTATGCCGAACATGACCTTTATGAAATAATTAGACATCATAGGGACAAAGTCAACCATTCCATTAATCAGTACACTGTTAAATCGATACTCTGGCAGTTGCTCAACGGACTAAACTATCTGCATGGTAATTGGATAATACATCGAGATTTAAAGCCATCAAATATATTGGTTATGGGTGAAGGGGAGGAACATGGGATTGTTAAAATTGCTGACTTTGGACTTGCAAGGATATATCAAGCCCCTCTGAAGCCATTATCTGAGAATGGGGTTGTTGTAACCATTTGGTATCGTGCACCTGAGTTGCTTCTTGGAGCAAAACATTATACCAGTGCTGTTGATATGTGGGCTGTGGGATGCATTTTTGCTGAGTTGTTAACCTTGAAGCCATTATTTCAAGGTGCAGAAGTCAAAGCTACACCAAATCCCTTTCAGCTCGATCAACTTGACAAGATATTCAAGGTTTTAGGCCATCCCACATTAGAAAAGTGGCCTTCCTTAGCAAATATTCCCCATTGGCAACAAGATATGCAACATATACAAGGACACAAATATGACAACACTAGCCTTTATAATGTTGTGCACCTACCTCCAAAAAGTGCTGCATATGACCTGTTGTCAAAGATGCTTGAATATGATCCTCGGAAGCGTATAACAGCAGCACAAGCTTTGGACCATGAGTATTTCAAAATTGAACCACTACCTGGGCGGAATGCACTTGTACCCTGCCAACCTGGAGAGTCATTTGTGAATTATCCCACACGTCCAGTGGACACAACGACAGATTTTGACGGGACCACCAACATGCAACCTTCACAGCTGGCATCTGGAGCTGTAGTTTCTGGCAACATCCCTGGTGGTCATGTGTCAAATAGATCTGTCCCACGGCCAGTGAATGTTGTTGGCATGCAAAGAATGCCTCATCAAGCAATGCAAGCTTATAATCTCACGTCTCAGGCAGGGATGGGTGGTGGAACGAACCCTGGTGGCATTCCAATGCAACGAGGTGTTCCACAGCAGCAACAGTTAAGAAGAAAAGACCAAATGGGGATGCCAGGATACCCTCCACAGCAGAAGTCAAGACGTATATAA 1413 0.4487 MGDGTATTAGNRSNNNSNKPEWLQQYDLIGKIGEGTYGLVFLARIKSSTNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHVDMSLYLAFDYAEHDLYEIIRHHRDKVNHSINQYTVKSILWQLLNGLNYLHGNWIIHRDLKPSNILVMGEGEEHGIVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATPNPFQLDQLDKIFKVLGHPTLEKWPSLANIPHWQQDMQHIQGHKYDNTSLYNVVHLPPKSAAYDLLSKMLEYDPRKRITAAQALDHEYFKIEPLPGRNALVPCQPGESFVNYPTRPVDTTTDFDGTTNMQPSQLASGAVVSGNIPGGHVSNRSVPRPVNVVGMQRMPHQAMQAYNLTSQAGMGGGTNPGGIPMQRGVPQQQQLRRKDQMGMPGYPPQQKSRRI 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2012g00020 470 Gene3D Phosphorylase Kinase; domain 1 10 108 - -
Gabi2012g00020 470 Pfam Protein kinase domain 26 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2012g00020 470 SUPERFAMILY Protein kinase-like (PK-like) 21 337 IPR011009 -
Gabi2012g00020 470 ProSitePatterns Protein kinases ATP-binding region signature. 32 59 IPR017441 GO:0005524
Gabi2012g00020 470 FunFam Putative cyclin-dependent kinase E-1 110 349 - -
Gabi2012g00020 470 SMART serkin_6 26 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2012g00020 470 CDD STKc_CDK8_like 25 336 - -
Gabi2012g00020 470 PANTHER CELL DIVISION PROTEIN KINASE 24 342 - -
Gabi2012g00020 470 FunFam Cyclin-dependent kinase e-1 14 109 - -
Gabi2012g00020 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 153 165 IPR008271 GO:0004672|GO:0006468
Gabi2012g00020 470 Gene3D Transferase(Phosphotransferase) domain 1 109 349 - -
Gabi2012g00020 470 MobiDBLite consensus disorder prediction 425 470 - -
Gabi2012g00020 470 ProSiteProfiles Protein kinase domain profile. 26 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2012g00020 Gabi-Chr2012 229708 239987 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2012g00020 1 470 Core Cell Cycle Gene Families AT5G63610 74.477 0.0 702
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Gabi2012g00020 Pkinase 2.6e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2012g00020 K02208 - gmx:100813433 863.988