Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2012g00013 ATGAAGGGTGAATTAGAGTTACCACCTGGTTTCAGATTTCACCCTACCGACGAGGAATTGGTGAATCACTACTTGTGTAGGAAATGTGCTGGACAATCAATCGCCGCTCCTATCATCAAAGAAATCGATTTGTATAAGTTTGATCCATGGCAGCTTCCAGAAATGGGTGTTTACAGTGAGAAAGAATGGTACTTTTTTTCTCCAAGGGACCGGAAATATCCGAACGGTTCACGGCCGAACCGGGCCGCCGGTAGCGGGTATTGGAAAGCAACCGGAGCTGACAAACCGATTGGAAAACCGAAAGCACTTGGGATTAAGAAGGCACTTGTTTTCTACGCAGGGAAAGCCCCTAAAGGCATGAAAACCAATTGGATTATGCATGAATATCGCCTTGCCAATGTTGATAGATCAGCCAAAAAGAAAAACAACTTGAGGCTTGATGATTGGGTGCTGTGTCGAATTTATAATAAGAAAGGGAAGGTTGAGAAATACAACAACACGGTACCAAAATTTTCAGGGGAGACGAAGCCAGAAATCCATAAATTCGCGAATGACCAATTGTACATGGACACGTCGGATTCGGTGCCACGTCTGCACACGGACTCGAGCTGCTCGGAGCACGTGGTTTCACCGGATGTCACGTGCGACAGGGAGGTTCAGAGCGAGCCAAAGTGGAATGAACTGGAGCTACAGCTAGATGACACGTTATTTGATTTTCAGTTCAATTACTTGGATGATAATAACCTGTCGGTGGATGACCCTTTTGGCACTCAGGCCCAGGCCCAGGCCCAGTACCAGATCAACCAGCTCTCGCCATTGCAGGACATGTTCATGTTCCTACAGAAGCCATTTTAA 855 0.4655 MKGELELPPGFRFHPTDEELVNHYLCRKCAGQSIAAPIIKEIDLYKFDPWQLPEMGVYSEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKPKALGIKKALVFYAGKAPKGMKTNWIMHEYRLANVDRSAKKKNNLRLDDWVLCRIYNKKGKVEKYNNTVPKFSGETKPEIHKFANDQLYMDTSDSVPRLHTDSSCSEHVVSPDVTCDREVQSEPKWNELELQLDDTLFDFQFNYLDDNNLSVDDPFGTQAQAQAQYQINQLSPLQDMFMFLQKPF 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2012g00013 284 Gene3D NAC domain 16 162 IPR036093 GO:0003677|GO:0006355
Gabi2012g00013 284 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Gabi2012g00013 284 PANTHER NAC TRANSCRIPTION FACTOR 56 7 201 - -
Gabi2012g00013 284 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Gabi2012g00013 284 FunFam NAC transcription factor 16 161 - -
Gabi2012g00013 284 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2012g00013 Gabi-Chr2012 160816 162110 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2012g00013 1 284 NAC Transcription Factor Family AT1G01720 65.000 2.56e-132 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi2012g00013 NAM 6.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2012g00013 - - gmx:100814504 488.804