Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2012g00012 ATGAAGGGTGAATTAGAGTTACCACCTGGTTTCAGATTTCACCCTACCGACGAGGAATTGGTGAATCACTACTTGTGTAGGAAATGTGCTGGACAATCAATCGCCGCTCCTATCATCAAAGAAATCGATTTGTATAAGTTTGATCCATGGCAGCTTCCAGAAATGGGTGTTTACAGTGAGAAAGAATGGTACTTTTTTTCTCCAAGGGACCGGAAATATCCGAACGGTTCACGGCCGAACCGGGCCGCCGGTAGCGGGTATTGGAAAGCAACCGGAGCTGACAAACCGATTGGAAAACCGAAAGCACTTGGGATTAAGAAGGCACTTGTTTTCTACGCAGGGAAAGCCCCTAAAGGCATGAAAACCAATTGGATTATGCATGAATATCGCCTTGCCAATGTTGATAGATCAGCCAAAAAGAAAAACAACTTGAGGCTTGATGATTGGGTGCTGTGTCGAATTTATAATAAGAAAGGGAAGGTTGAGAAATACAACAACACGGTACCAAAATTTTCAGGGGAGGTTCATGTTAACTATGAGCATGAGAATGAGACGAAGCCAGAAATCCATAAATTCGCGAATGACCAATTGTACATGGACACGTCGGATTCGGTGCCACGTCTGCACACGGACTCGAGCTGCTCGGAGCACGTGGTTTCACCGGATGTCACGTGCGACAGGGAGGTTCAGAGCGAGCCAAAGTGGAATGAACTGGAGCTACAGCTAGATGACACGTTATTTGATTTTCAGTTCAATTACTTGGATGATAATAACCTGTCGGTGGATGACCCTTTTGGCACTCAGGCCCAGGCCCAGGCCCAGTACCAGATCAACCAGCTCTCGCCATTGCAGGACATGTTCATGTTCCTACAGAAGCCATTTTAA 885 0.4621 MKGELELPPGFRFHPTDEELVNHYLCRKCAGQSIAAPIIKEIDLYKFDPWQLPEMGVYSEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKPKALGIKKALVFYAGKAPKGMKTNWIMHEYRLANVDRSAKKKNNLRLDDWVLCRIYNKKGKVEKYNNTVPKFSGEVHVNYEHENETKPEIHKFANDQLYMDTSDSVPRLHTDSSCSEHVVSPDVTCDREVQSEPKWNELELQLDDTLFDFQFNYLDDNNLSVDDPFGTQAQAQAQYQINQLSPLQDMFMFLQKPF 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2012g00012 294 Gene3D NAC domain 16 163 IPR036093 GO:0003677|GO:0006355
Gabi2012g00012 294 FunFam NAC transcription factor 16 161 - -
Gabi2012g00012 294 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Gabi2012g00012 294 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Gabi2012g00012 294 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Gabi2012g00012 294 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2012g00012 Gabi-Chr2012 160816 162110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2012g00012 1 294 NAC Transcription Factor Family AT1G01720 63.725 1.11e-131 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi2012g00012 NAM 7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2012g00012 - - gmx:100814504 506.523