Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2010g00015 ATGATCATCTTCTGGCTCATCATACCAGACTTTGGACGAGCTTCTTATGTCTATAATAACCTTTTTGGCTCACGTATGTCCATGAAACCTCATGCAGTCACAAGCAGGTTAAATAACTGGAGGAAGTTTTTTGCTAAGAAAGAAAACTTTTTACTGCACGCAGAGAGATATATAAAAGAGAATGGAATTGAAGCCTTAGAGAAACTCATTGCTGACAAGGCAAATGGGAAAGCGCTCCAAACAGAGCACAAAGACATCAAAGATAGCACAACGAATAAACTGGATGTGGAGGAAACAAATGTAATTAGAACTACTTATATGAAAGAAATGCAACAGACAAATGGGAAAAAGCTCCAAACAGAGCACAAAGACATCAAAGATTTGGAGGTGATTGAGAAAAAGGAAATTCCTACAGGCAAGCAAGATATCCCTGTTATGCCTAACCTTGCACCAAGTCAGAATGCTTCATCAACCATGATGGAAACTAAAGGAATAGCAACAGGGAAAGACAGTGCTGGTGGAGAGCTTCTTCAGAGCTCTACACATAAAGAAGTGCAGAAAGAGTGGACTTGTGCTGTATGTCTGGTAACAACTACAAGTGAAAAAACCTTGAATTTCCACCTGCATGGGAAGAAACACAGGGCTACTTGTGAAGCTCTTAAAGCAAAGAATCAACCTGTTCCGCAGAAGATGAAAACCGATCAGTCCAAAAAGGAATCGAAACAGAAGAACATAAACAATCAGCTTAATTCCAAGACCACGAATGGGGAGAGTACAGTTAACAACGGCTTGAAAGGGAAAACAGTCATGCATCATTCGAAGGTGCAAGAACAGCAAAAGAATGTTGGTGAACCTGTAAGGATGAATCATTCCATATTAAGGTGTGAAGTTTGTAATGTCAATTGCACTAGTGAGCTTGACATGGCCTCTCACTTAAAAGGGAGGAAGCACATGGCTCAAATTAAAATCTAA 972 0.3992 MIIFWLIIPDFGRASYVYNNLFGSRMSMKPHAVTSRLNNWRKFFAKKENFLLHAERYIKENGIEALEKLIADKANGKALQTEHKDIKDSTTNKLDVEETNVIRTTYMKEMQQTNGKKLQTEHKDIKDLEVIEKKEIPTGKQDIPVMPNLAPSQNASSTMMETKGIATGKDSAGGELLQSSTHKEVQKEWTCAVCLVTTTSEKTLNFHLHGKKHRATCEALKAKNQPVPQKMKTDQSKKESKQKNINNQLNSKTTNGESTVNNGLKGKTVMHHSKVQEQQKNVGEPVRMNHSILRCEVCNVNCTSELDMASHLKGRKHMAQIKI 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2010g00015 323 SUPERFAMILY beta-beta-alpha zinc fingers 285 322 IPR036236 -
Gabi2010g00015 323 PANTHER OS06G0651300 PROTEIN-RELATED 156 322 - -
Gabi2010g00015 323 SMART c2h2final6 189 213 IPR013087 -
Gabi2010g00015 323 SMART c2h2final6 293 317 IPR013087 -
Gabi2010g00015 323 Gene3D Classic Zinc Finger 270 323 - -
Gabi2010g00015 323 Gene3D Classic Zinc Finger 174 219 - -
Gabi2010g00015 323 MobiDBLite consensus disorder prediction 221 264 - -
Gabi2010g00015 323 SMART ZnF_U1_5 290 323 IPR003604 GO:0003676|GO:0008270
Gabi2010g00015 323 SMART ZnF_U1_5 186 220 IPR003604 GO:0003676|GO:0008270
Gabi2010g00015 323 Pfam Zinc-finger of C2H2 type 294 317 - -
Gabi2010g00015 323 Pfam Zinc-finger of C2H2 type 189 213 - -
Gabi2010g00015 323 MobiDBLite consensus disorder prediction 242 264 - -
Gabi2010g00015 323 SUPERFAMILY beta-beta-alpha zinc fingers 181 225 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2010g00015 Gabi-Chr2010 216172 220614 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2010g00015 189 323 C2H2 Transcription Factor Family AT2G19380 26.667 6.67e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2010g00015 - - gmx:100812073 369.392