Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2010g00014 ATGGCTTCTTTGTGGTTTCTCAAGCTGGCTCTAAAATGCGTTGATCATTTCGCATGGCCTCTTCTTGCTCTGGGGTATCCTCTATGTGCTTCCGTACAAGCAATCGAGACTGATTCCCATGCAGAAACTAGGGATTTGATCTCATACTGGATACTTCTCTCATTAATATATCTCTTCGAGTATGCTTTTCTGAGGCTTCTTCAATGGTTCCAGTTCTGGCCTTACCTTAAGCTAATGATCATCTTCTGGCTCATCATACCAGACTTTGGACGAGCTTCTTATGTCTATAATAACCTTTTTGGCTCACGTATGTCCATGAAACCTCATGCAGTCACAAGCAGGTTAAATAACTGGAGGAAGTTTTTTGCTAAGAAAGAAAACTTTTTACTGCACGCAGAGAGATATATAAAAGAGAATGGAATTGAAGCCTTAGAGAAACTCATTGCTGACAAGGCAAATGGGAAAGCGCTCCAAACAGAGCACAAAGACATCAAAGATAGCACAACGAATAAACTGGATGTGGAGGAAACAAATGTAATTAGAACTACTTATATGAAAGAAATGCAACAGACAAATGGGAAAAAGCTCCAAACAGAGCACAAAGACATCAAAGATTTGGAGGTGATTGAGAAAAAGGAAATTCCTACAGGCAAGCAAGATATCCCTGTTATGCCTAACCTTGCACCAAGTCAGAATGCTTCATCAACCATGATGGAAACTAAAGGAATAGCAACAGGGAAAGACAGTGCTGGTGGAGAGCTTCTTCAGAGCTCTACACATAAAGAAGTGCAGAAAGAGTGGACTTGTGCTGTATGTCTGGTAACAACTACAAGTGAAAAAACCTTGAATTTCCACCTGCATGGGAAGAAACACAGGGCTACTTGTGAAGCTCTTAAAGCAAAGAATCAACCTGTTCCGCAGAAGATGAAAACCGATCAGTCCAAAAAGGAATCGAAACAGAAGAACATAAACAATCAGCTTAATTCCAAGACCACGAATGGGGAGAGTACAGTTAACAACGGCTTGAAAGGGAAAACAGTCATGCATCATTCGAAGGTGCAAGAACAGCAAAAGAATGTTGGTGAACCTGTAAGGATGAATCATTCCATATTAAGGTGTGAAGTTTGTAATGTCAATTGCACTAGTGAGCTTGACATGGCCTCTCACTTAAAAGGGAGGAAGCACATGGCTCAAATTAAAATCTAA 1206 0.4055 MASLWFLKLALKCVDHFAWPLLALGYPLCASVQAIETDSHAETRDLISYWILLSLIYLFEYAFLRLLQWFQFWPYLKLMIIFWLIIPDFGRASYVYNNLFGSRMSMKPHAVTSRLNNWRKFFAKKENFLLHAERYIKENGIEALEKLIADKANGKALQTEHKDIKDSTTNKLDVEETNVIRTTYMKEMQQTNGKKLQTEHKDIKDLEVIEKKEIPTGKQDIPVMPNLAPSQNASSTMMETKGIATGKDSAGGELLQSSTHKEVQKEWTCAVCLVTTTSEKTLNFHLHGKKHRATCEALKAKNQPVPQKMKTDQSKKESKQKNINNQLNSKTTNGESTVNNGLKGKTVMHHSKVQEQQKNVGEPVRMNHSILRCEVCNVNCTSELDMASHLKGRKHMAQIKI 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2010g00014 401 Gene3D Classic Zinc Finger 348 401 - -
Gabi2010g00014 401 Gene3D Classic Zinc Finger 252 297 - -
Gabi2010g00014 401 MobiDBLite consensus disorder prediction 320 342 - -
Gabi2010g00014 401 SMART ZnF_U1_5 264 298 IPR003604 GO:0003676|GO:0008270
Gabi2010g00014 401 SMART ZnF_U1_5 368 401 IPR003604 GO:0003676|GO:0008270
Gabi2010g00014 401 SUPERFAMILY beta-beta-alpha zinc fingers 259 303 IPR036236 -
Gabi2010g00014 401 Pfam TB2/DP1, HVA22 family 27 100 IPR004345 -
Gabi2010g00014 401 SUPERFAMILY beta-beta-alpha zinc fingers 363 400 IPR036236 -
Gabi2010g00014 401 SMART c2h2final6 267 291 IPR013087 -
Gabi2010g00014 401 SMART c2h2final6 371 395 IPR013087 -
Gabi2010g00014 401 MobiDBLite consensus disorder prediction 299 342 - -
Gabi2010g00014 401 PANTHER OS06G0651300 PROTEIN-RELATED 241 400 - -
Gabi2010g00014 401 Pfam Zinc-finger of C2H2 type 372 395 - -
Gabi2010g00014 401 Pfam Zinc-finger of C2H2 type 267 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2010g00014 Gabi-Chr2010 216171 220641 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2010g00014 267 401 C2H2 Transcription Factor Family AT2G19380 26.667 2.42e-07 50.8