Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2010g00013 ATGGCTTCTTTGTGGTTTCTCAAGCTGGCTCTAAAATGCGTTGATCATTTCGCATGGCCTCTTCTTGCTCTGGGGTATCCTCTATGTGCTTCCGTACAAGCAATCGAGACTGATTCCCATGCAGAAACTAGGGATTTGATCTCATACTGGATACTTCTCTCATTAATATATCTCTTCGAGTATGCTTTTCTGAGGCTTCTTCAATGGTTCCAGTTCTGGCCTTACCTTAAGCTAATGATCATCTTCTGGCTCATCATACCAGACTTTGGACGAGCTTCTTATGTCTATAATAACCTTTTTGGCTCACAGAGATATATAAAAGAGAATGGAATTGAAGCCTTAGAGAAACTCATTGCTGACAAGGCAAATGGGAAAGCGCTCCAAACAGAGCACAAAGACATCAAAGATAGCACAACGAATAAACTGGATGTGGAGGAAACAAATGTAATTAGAACTACTTATATGAAAGAAATGCAACAGACAAATGGGAAAAAGCTCCAAACAGAGCACAAAGACATCAAAGATTTGGAGGTGATTGAGAAAAAGGAAATTCCTACAGGCAAGCAAGATATCCCTGTTATGCCTAACCTTGCACCAAGTCAGAATGCTTCATCAACCATGATGGAAACTAAAGGAATAGCAACAGGGAAAGACAGTGCTGGTGGAGAGCTTCTTCAGAGCTCTACACATAAAGAAGTGCAGAAAGAGTGGACTTGTGCTGTATGTCTGGTAACAACTACAAGTGAAAAAACCTTGAATTTCCACCTGCATGGGAAGAAACACAGGGCTACTTGTGAAGCTCTTAAAGCAAAGAATCAACCTGTTCCGCAGAAGATGAAAACCGATCAGTCCAAAAAGGAATCGAAACAGAAGAACATAAACAATCAGCTTAATTCCAAGACCACGAATGGGGAGAGTACAGTTAACAACGGCTTGAAAGGGAAAACAGTCATGCATCATTCGAAGGTGCAAGAACAGCAAAAGAATGTTGGTGAACCTGTAAGGATGAATCATTCCATATTAAGGTGTGAAGTTTGTAATGTCAATTGCACTAGTGAGCTTGACATGGCCTCTCACTTAAAAGGGAGGAAGCACATGGCTCAAATTAAAATCTAA 1116 0.4068 MASLWFLKLALKCVDHFAWPLLALGYPLCASVQAIETDSHAETRDLISYWILLSLIYLFEYAFLRLLQWFQFWPYLKLMIIFWLIIPDFGRASYVYNNLFGSQRYIKENGIEALEKLIADKANGKALQTEHKDIKDSTTNKLDVEETNVIRTTYMKEMQQTNGKKLQTEHKDIKDLEVIEKKEIPTGKQDIPVMPNLAPSQNASSTMMETKGIATGKDSAGGELLQSSTHKEVQKEWTCAVCLVTTTSEKTLNFHLHGKKHRATCEALKAKNQPVPQKMKTDQSKKESKQKNINNQLNSKTTNGESTVNNGLKGKTVMHHSKVQEQQKNVGEPVRMNHSILRCEVCNVNCTSELDMASHLKGRKHMAQIKI 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2010g00013 371 SUPERFAMILY beta-beta-alpha zinc fingers 333 370 IPR036236 -
Gabi2010g00013 371 Gene3D Classic Zinc Finger 318 371 - -
Gabi2010g00013 371 Gene3D Classic Zinc Finger 222 267 - -
Gabi2010g00013 371 MobiDBLite consensus disorder prediction 269 312 - -
Gabi2010g00013 371 Pfam Zinc-finger of C2H2 type 237 261 - -
Gabi2010g00013 371 Pfam Zinc-finger of C2H2 type 342 365 - -
Gabi2010g00013 371 Pfam TB2/DP1, HVA22 family 27 100 IPR004345 -
Gabi2010g00013 371 SUPERFAMILY beta-beta-alpha zinc fingers 229 273 IPR036236 -
Gabi2010g00013 371 PANTHER OS06G0651300 PROTEIN-RELATED 204 370 - -
Gabi2010g00013 371 SMART ZnF_U1_5 338 371 IPR003604 GO:0003676|GO:0008270
Gabi2010g00013 371 SMART ZnF_U1_5 234 268 IPR003604 GO:0003676|GO:0008270
Gabi2010g00013 371 SMART c2h2final6 237 261 IPR013087 -
Gabi2010g00013 371 SMART c2h2final6 341 365 IPR013087 -
Gabi2010g00013 371 MobiDBLite consensus disorder prediction 290 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2010g00013 Gabi-Chr2010 216171 220641 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2010g00013 237 371 C2H2 Transcription Factor Family AT2G19380 26.667 1.93e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2010g00013 - - lja:Lj4g3v0387230.3 454.907