LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2010g00010	ATGTTGTTGTCCATTTTCTTCTTCTTGATTATCCCATATGCATCCTCTTTATCCTTTAACTTCACTAATTTTGATCCCAATGGCAAGAGCATTATATATGAGGGATCAGCTTACTCTGCTGCACCAGCTATCCAACTTACAAGAAACCAGGTGGACAAGAACATGATTGAAAGTATTGGTCGAGCCTCATACTACCAACCTATGCACCTGTGGGACAATACCACAAGAAATCTCACAGATTTCACAACCCATTTCTCTTTTATTATAGATTCACAGAATCGAAGTAGATATGGAGATGGGATTGCTTTCTTCCTTGCCCCTGCTGGTTCAAAGATTCCTAATGCCACAAAAGGAGGTTCCATGGGTCTCACACTTGACAATCAGATGTTGAACTCAACTGATAATCCATTTGTTGCTGTGGAGTTTGATATCTATCGGAACTTCTGGGATCCACCCAATGAACATGTTGGCATCGACATCAACTCTATGAGATCTGTTGCTAATGTGACATGGTTGGCTGATATCAAGGAAGGAAAGCTCAATGAAGCTTGGATCAGTTACAATTCGAGTTCACTAAATTTAAGTATTGTTTTCAATGGTTATAACAATGACACCGTTCTGCAGCAACAACTATCTGCCATAGTTGATCTGAGACTTTATCTGCCAGAAATGGTTACTCTTGGCTTCTCGTCTGCCACAGGAAATTTAACTGCTATACATAGTATCTATTCATGGGATTTTAGCTCTACTTTGGGAGCACAAGAAAACATCACGAACTCACAAAACCCAGTTGCAATGTCTCCAACCTTCAATAATACGGCTCCCATTCAGAAGAAAAAGGCAAGGACAGGACTAGCAATGGGATTGGGTATCGGTGGATCTGTTTTAATTGGTGGATTGGGTTTGATTTCAATAGTCTTGTGGAAGAAGTGGAAGAAAGTAACTGAAGATGAAGATCATGGTTTTGAAGAGTATATGGGTGAGGATTTTGGAAGGGGGACAGGACCCCGGAAGTACTCTTATGCTGAATTGTCCCATGCAGCTAATAATTTTAAAGATGAGCATAAGCTAGGACAGGGAGGATTTGGAGGCGTTTATAAGGGTTATCTCAAAGACATTAAGTCTTATGTTGCTATTAAGACGGTTTCAGAAGGTTCTGATCAAGGGATAAAGGAGTTTGCATCAGAAGTAAGAATTATTGGCCTTTTAAGGCATCGAAATCTAGTGCAATTGATTGGTTGGTGTCATGAAAAGAAAAAGCTATTGCTTGTGTATGAGTACATGCCAAATGGAAGCTTAGACGTTCATTTGTTCAAAAAACAAAACTTGTTGAAATGGGCTGTGAGATATAACATAGCTCGAGGCTTGGCATCTGCATTGCTATACTTGCACGAAGAATGGGAACAATGTGTTGTACACAGAGACATAAAACCAAGCAACATTATGCTAGATTCGGAGTTTAATGCAAAACTAGGGGATTTTGGTTTAGCAAGGTTTGTGGACCATGCAAAAGGTGCACAAACTACAGCTTTAGCTGGGACTATAGGCTACTTGGCTCCAGAATGTGCTACCATGGGCAGGGCCAGTAAGGAATCAGATGTATACAGTTTTGGAGTTGTTGCTTTAGAGATAGCTAGCGGAAGAAAACCCATAAGCCTTGAAGCACAAGAAAATGAAATAAATATTGTGGAGTGGGTCTGGGGCCTCTATGGAAAAGGTAGAATTCTTGAAGCAGTGGATCCAAGACTAGGTGGAGATTTTGCGGAGGAGCAAATCAAATGCTTGATGATTGTTGGTCTTTGGTGTGCTCACCCTAATCAAAATGATAGGCCCTCAGTTAGGCAAGCGATTCAAGTGCTTAACTTTGAAGCTCCCTTTCCTAATCTTCCATCAAGTTTTCCAGTGCCAACATATCTTGACTTCCCAATGAACTCCTCCATAGCTCCATTCAGCATAAATGCTTCTGGGGAAGGTCAACACCACAACATAAGCTTTAGTTCTAACACAAACTCCTCTGGTTTCACCACAACTTCTGATGATGTTTCTCCATCTGTGTCGCTTCTGTACACACGGTAA	2076	0.409	MLLSIFFFLIIPYASSLSFNFTNFDPNGKSIIYEGSAYSAAPAIQLTRNQVDKNMIESIGRASYYQPMHLWDNTTRNLTDFTTHFSFIIDSQNRSRYGDGIAFFLAPAGSKIPNATKGGSMGLTLDNQMLNSTDNPFVAVEFDIYRNFWDPPNEHVGIDINSMRSVANVTWLADIKEGKLNEAWISYNSSSLNLSIVFNGYNNDTVLQQQLSAIVDLRLYLPEMVTLGFSSATGNLTAIHSIYSWDFSSTLGAQENITNSQNPVAMSPTFNNTAPIQKKKARTGLAMGLGIGGSVLIGGLGLISIVLWKKWKKVTEDEDHGFEEYMGEDFGRGTGPRKYSYAELSHAANNFKDEHKLGQGGFGGVYKGYLKDIKSYVAIKTVSEGSDQGIKEFASEVRIIGLLRHRNLVQLIGWCHEKKKLLLVYEYMPNGSLDVHLFKKQNLLKWAVRYNIARGLASALLYLHEEWEQCVVHRDIKPSNIMLDSEFNAKLGDFGLARFVDHAKGAQTTALAGTIGYLAPECATMGRASKESDVYSFGVVALEIASGRKPISLEAQENEINIVEWVWGLYGKGRILEAVDPRLGGDFAEEQIKCLMIVGLWCAHPNQNDRPSVRQAIQVLNFEAPFPNLPSSFPVPTYLDFPMNSSIAPFSINASGEGQHHNISFSSNTNSSGFTTTSDDVSPSVSLLYTR	691

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2010g00010	691	FunFam	L-type lectin-domain containing receptor kinase IX.1	336	427	-	-
	Gabi2010g00010	691	Pfam	Protein kinase domain	351	618	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi2010g00010	691	Gene3D	-	14	263	-	-
	Gabi2010g00010	691	Pfam	Legume lectin domain	16	262	IPR001220	GO:0030246
	Gabi2010g00010	691	MobiDBLite	consensus disorder prediction	663	691	-	-
	Gabi2010g00010	691	CDD	lectin_legume_LecRK_Arcelin_ConA	17	251	IPR001220	GO:0030246
	Gabi2010g00010	691	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	471	483	IPR008271	GO:0004672\|GO:0006468
	Gabi2010g00010	691	PANTHER	-	45	630	-	-
	Gabi2010g00010	691	FunFam	Lectin-domain containing receptor kinase A4.3	428	640	-	-
	Gabi2010g00010	691	FunFam	L-type lectin-domain containing receptor kinase IX.1	15	260	-	-
	Gabi2010g00010	691	Gene3D	Transferase(Phosphotransferase) domain 1	428	641	-	-
	Gabi2010g00010	691	Gene3D	Phosphorylase Kinase; domain 1	336	427	-	-
	Gabi2010g00010	691	ProSitePatterns	Protein kinases ATP-binding region signature.	357	380	IPR017441	GO:0005524
	Gabi2010g00010	691	ProSiteProfiles	Protein kinase domain profile.	351	627	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi2010g00010	691	SMART	serkin_6	351	626	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi2010g00010	691	SUPERFAMILY	Concanavalin A-like lectins/glucanases	14	253	IPR013320	-
	Gabi2010g00010	691	CDD	STKc_IRAK	357	621	-	-
	Gabi2010g00010	691	SUPERFAMILY	Protein kinase-like (PK-like)	335	638	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2010g00010	Gabi-Chr2010	192930	195005	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2010g00010	2	638	Receptor kinase-like Gene Family	AT5G10530	48.080	0.0	566

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Gabi2010g00010		Pkinase	1.5e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2010g00010	-		-	gmx:100817743	1108.2