Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2010g00008 ATGGCTTGTTGTGGTTTGCATTTTGGTCACCATGCAACAAGTTATGTTAGGGGAACCCTTTTGTTCCTCCTGATAATCCCTCTTGTACATGCTCAGCTTGTGTCTTTTGATTACCAAAACTTTGTTAATGCTGATTTGCAGCAGCAGCAGCAGCTAAAGCTGGAAGGAGATGCTTCTGTTTCAGATTGTACCATCCAACTCACAAGTGGTAACTGGATTGGGAGTGTTGGTCGAGTCACAAGTTCCAACCTTATTCAACTTTGGAACGAAACCTCAAATCAACAAAAGGACTTCACTACCGAATTTTCCTTCATTGTTTTCTCAAATCAGAATTATTATGGAGAAGGTTTGGCTTTCTTCCTAGCAAGCCCAAATCTCCCAGATGCAAATGACACAGAAATAAAACGAGGAGGCCTTGGCCTTGGTCGTGTGCATGACAAAACACCTCTCCCTATTGATTATAAGTTTGTGGCAGTGGAGTTTGACACTAACTCAAACCAGTGGGACCCAACTAGCTTACATGTAGGTGTGGATGTCAACTCTATGCAGTCTAACATACTTCGGAAATGGGGAACAGATATTTCTCGAAGGAGCGTTTATGACTGTAGTATTGTATATAATTCAAGAGATAAAATTCTAGATGTGTCTTTCACGGGATACATACTCGATCTGCCAGTAACAAAGTACCTTTCATACCACATTGATATCACAGAGCACTTACCAGAGTCGGTTATTGTTGGCATATCAGCTGCAACAGGAGCAAATCCTGAGGAACATACCCTTCTTTCGTGGTCATTTAGTACAAGCAATGCCGATCCTAAGAAGGAAAGAAACACAAAATTGCTGGAGGGAATAGGAATTGGTGTAGGTTTGTCTGTGACTTTAGTAGGGTTGGTCCACATTTTATTATGGATGATGGATAAAGGAAAAGGAAAAGAATCCCCCTCAGAAACCACTTCTGATTATAACATGGATGATGAATTCCACATCAGCACTGGACCCAAGAAGATCAGCTATAATGAATTGGTAACTGCAACAAACAACTTCGCAGATACACAGAAGCTTGGGAAAGGTGGTTTTGGTTGTGTTTATAAAGGTTATTTTAAAGACTCAAACTCCTATGTCGCTATAAAGAGGATATCAGCAGAATCAAGACAGGGTATAAAGGAATACGCAGCAGAAGTGAAGATCATTAGCCAATTGAGGCATAGGAATTTGGTGCAACTCATTGGTTGGTGCCACAAGAAGAATGATCTCCTCCTGATCTACGAGTACATGCCAAATGGCAGCTTAGATTCTCATCTTTTTCATGGAGAAAGCATCTTGTGGTGGCAGGTGAGGTACAACATAGCTCTGGGATTGGCCTCAGCATTGCTTTACCTACAAGAAGGATGGGAAAAATGTGTGCTTCATAGGGACATCAAATCAAGCAACATAATGTTAGACTCCAATTTTAATGCTAAGCTTGGCGATTTTGGCCTAGCTAAGCAGGTGGATCATGAGAAAGGGTCACAAACCACAGATGTGGCTGGGACCATTGGTTATCTAGGCCCTGAATATATGAAAACCGGCAAGGCTAGAAAAGAATCCGACATATTCAGTTTTGGGATTGTTTTGTTGGAGATAGCCAGTGGAAGAGAAGCCACGAACAACAATGACAAGGAGGGTCAAGTATTATTAGTTGAATGGGTTTGGGAGCTCTATGGTTTGAGAAATCTCCTTGCAGCAGCAGACCCAAAGCTATGTGGGGTACTTGATGTGCAACAAATGGAATGCTTGTTGGTTGTTGGTCTTTGGTGTGCAAATCCAGATTACATATCCAGGCCCTCTATAAGGCAAGTGATTAAGGTGCTTAACTTCGAAGTTCCTTTACCAATTCTCCCACAAAAGATCCCTGTGGTAATCTATCTCCCTCCGACAACATATTGA 1929 0.4178 MACCGLHFGHHATSYVRGTLLFLLIIPLVHAQLVSFDYQNFVNADLQQQQQLKLEGDASVSDCTIQLTSGNWIGSVGRVTSSNLIQLWNETSNQQKDFTTEFSFIVFSNQNYYGEGLAFFLASPNLPDANDTEIKRGGLGLGRVHDKTPLPIDYKFVAVEFDTNSNQWDPTSLHVGVDVNSMQSNILRKWGTDISRRSVYDCSIVYNSRDKILDVSFTGYILDLPVTKYLSYHIDITEHLPESVIVGISAATGANPEEHTLLSWSFSTSNADPKKERNTKLLEGIGIGVGLSVTLVGLVHILLWMMDKGKGKESPSETTSDYNMDDEFHISTGPKKISYNELVTATNNFADTQKLGKGGFGCVYKGYFKDSNSYVAIKRISAESRQGIKEYAAEVKIISQLRHRNLVQLIGWCHKKNDLLLIYEYMPNGSLDSHLFHGESILWWQVRYNIALGLASALLYLQEGWEKCVLHRDIKSSNIMLDSNFNAKLGDFGLAKQVDHEKGSQTTDVAGTIGYLGPEYMKTGKARKESDIFSFGIVLLEIASGREATNNNDKEGQVLLVEWVWELYGLRNLLAAADPKLCGVLDVQQMECLLVVGLWCANPDYISRPSIRQVIKVLNFEVPLPILPQKIPVVIYLPPTTY 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2010g00008 642 Pfam Protein kinase domain 350 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2010g00008 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Gabi2010g00008 642 ProSitePatterns Legume lectins beta-chain signature. 157 163 IPR019825 -
Gabi2010g00008 642 ProSitePatterns Protein kinases ATP-binding region signature. 355 378 IPR017441 GO:0005524
Gabi2010g00008 642 Gene3D Transferase(Phosphotransferase) domain 1 426 637 - -
Gabi2010g00008 642 ProSiteProfiles Protein kinase domain profile. 349 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2010g00008 642 Pfam Legume lectin domain 34 278 IPR001220 GO:0030246
Gabi2010g00008 642 FunFam L-type lectin-domain containing receptor kinase IX.1 334 425 - -
Gabi2010g00008 642 Gene3D Phosphorylase Kinase; domain 1 334 425 - -
Gabi2010g00008 642 SUPERFAMILY Concanavalin A-like lectins/glucanases 31 273 IPR013320 -
Gabi2010g00008 642 Gene3D - 32 285 - -
Gabi2010g00008 642 CDD lectin_legume_LecRK_Arcelin_ConA 34 269 IPR001220 GO:0030246
Gabi2010g00008 642 CDD STKc_IRAK 355 619 - -
Gabi2010g00008 642 FunFam Lectin-domain containing receptor kinase A4.3 426 638 - -
Gabi2010g00008 642 SUPERFAMILY Protein kinase-like (PK-like) 323 620 IPR011009 -
Gabi2010g00008 642 SMART serkin_6 349 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2010g00008 642 PANTHER - 62 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2010g00008 Gabi-Chr2010 170145 172073 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2010g00008 22 636 Receptor kinase-like Gene Family AT5G10530 44.992 7.86e-174 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gabi2010g00008 Pkinase 3.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2010g00008 - - cam:101492002 751.125