Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2010g00007 ATGACTAGCTGTGGTTGGCATTTTAGTCTCCATGCAACAACTCCTCTTTTCTGTTATTCAAGGATAACCATTTTGTTGCTTCTGATAATCCCTCTTGCATATGCTCAGACTCTATCTTTTGATTACCCCAACTTTATTAATGATGGTCAAAACCAGCTAAAGCTTGAAGGAGATGCTTCTACTTCAGATTCTGGCATCCAAATCACAAGTAACAACAGGACTGGGAGTATTGGGCGAGTCACGTTTCCCGAGCCGGTGCATCTTTGGGACAGCAGCACAAAAGAAAAAAAAGACTTCTCTACCAACTTTTCCTTTGTTCTTTTCTCAAATCAGAGTTCTTATGGAGATGGTTTGGCATTCTTTCTAGCAAGCCCAAATCTTCCAAGCACAAATGATAAACCAGAGCTAAATGGAGGAGGCCTTGGTATTGGTCTTGCGGATGCTAACCAAAATCTTATCAAACCTTACTATAGTTTTGTGGCAGTGGAGTTTGACACTTTCTCAAACCGTTGGGACCCAAATGGTGCACATGTTGCTGTTAATATCAATTCTATGGAGTCTGACATACTTGAGGAATGGACGACAGATATTTCAAAAGGGGAAGTTCATTACTGTTATATTGAATACGATTCTAGAAATAATAACTTAAATGTTTCTTTCAATGGATATATATCCTATGATGGGAACGTAACACACACCACACAATACTTTTCATACAACATTGATATTGGAGAGTACTTACCAGAGTCGGTTATTGTTGGCATATCAGCTGCAACAGGAGCAAATTATGAGGAACATACCCTGATTTCATGGTCATTTAGTACAAGCAATGCTGATCCCAAGAAGGAAAGATGGTTAATCAACACAAAATTGTTGGTGGGGATAGGAATTGGTATTGGTTTGTCTTTGATTTTATTAGGGTTAGTCCATATTATATTATGGAAGATGAATAAAGGAAAAGAAGAACCCACTTCGCATCTGAAGATGGATGATGAACACCAAATGGGCACTAGACTTAAAAAATTTAGTTATTATGAATTGGCATCTGCAACAAACAACTTTGAAGACACGCAGAAGCTTGGGCAAGGTGGTTTTGGTGGTTTTTATAAAGGTTATTTGAAAGCTTCTCACTCTTTTGCTGCTATAAAGAGGATATCAGCAAATTCTAGACAGGATATAAAGCAATACGCAGCAGAAGTTAAGATCATTAGCCAATTGAGGCATGGGAATTTGGTAAGACTCACTGGTTGGTGTCACAAGAAGAATGATCTCCTCTTGGTATACGAGTACATGCCAAATGGTAGCTTAGATTCTCATCTTTTCCGTGGAGAAAGCATCTTGTCGTTGTCGTGGCAGGTGAGGTACAACATAGCTCTGGGGTTGGCTTCAGCATTGTTTTACCTTCAGGAAGGATGGGAAAAATGTGTGCTTCATAGGGACATCAAATCAAGCAACATAATGTTGGACTCCAACTTCAATGCTAAGCTTGGTGATTTTGGCCTAGCTAGGCTGGTGGAGCATGAGAAAGGGTCACAAACCACAGTTGTAGCTCGGACAATGGGTTACCTAGCACCTGAATCCATAAACACAGGCAAGGCTGGAAAGGAATCGGACATATTCAGTTTTGGGGTTGTTTTGTTGGAGTTAGCCAGCGGAAGAAAAGCCATTCACCACAATGACAAGGAGGGTCAAGTATCATTAGTTGAGTGGATTTGGGAGCTCTACGGATTTAGAAATCTTTTTGCAGCAGCAGACCCAAAGCTATGTGGGGTATTTGATGTGCAGCAAATGGGATGTATGCTGGCAGTTGGCTTATGGTGTGCCAATCCAGATTTCACATCTAGGCCTTCTATAATGCAAGTGATTAAGGTACTTAGTTTTGAAGCTCCATTACCAATTCTCCCGCAAAAGACTCCCGTGATAGTCTATTTCCCTCCAACCACAAATGAGCCTTTTCATTCAGTTTCATCTTCCTTTGGGGATACAAGTTAA 1992 0.4046 MTSCGWHFSLHATTPLFCYSRITILLLLIIPLAYAQTLSFDYPNFINDGQNQLKLEGDASTSDSGIQITSNNRTGSIGRVTFPEPVHLWDSSTKEKKDFSTNFSFVLFSNQSSYGDGLAFFLASPNLPSTNDKPELNGGGLGIGLADANQNLIKPYYSFVAVEFDTFSNRWDPNGAHVAVNINSMESDILEEWTTDISKGEVHYCYIEYDSRNNNLNVSFNGYISYDGNVTHTTQYFSYNIDIGEYLPESVIVGISAATGANYEEHTLISWSFSTSNADPKKERWLINTKLLVGIGIGIGLSLILLGLVHIILWKMNKGKEEPTSHLKMDDEHQMGTRLKKFSYYELASATNNFEDTQKLGQGGFGGFYKGYLKASHSFAAIKRISANSRQDIKQYAAEVKIISQLRHGNLVRLTGWCHKKNDLLLVYEYMPNGSLDSHLFRGESILSLSWQVRYNIALGLASALFYLQEGWEKCVLHRDIKSSNIMLDSNFNAKLGDFGLARLVEHEKGSQTTVVARTMGYLAPESINTGKAGKESDIFSFGVVLLELASGRKAIHHNDKEGQVSLVEWIWELYGFRNLFAAADPKLCGVFDVQQMGCMLAVGLWCANPDFTSRPSIMQVIKVLSFEAPLPILPQKTPVIVYFPPTTNEPFHSVSSSFGDTS 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2010g00007 663 ProSitePatterns Legume lectins beta-chain signature. 160 166 IPR019825 -
Gabi2010g00007 663 PANTHER - 57 629 - -
Gabi2010g00007 663 SUPERFAMILY Concanavalin A-like lectins/glucanases 35 281 IPR013320 -
Gabi2010g00007 663 CDD lectin_legume_LecRK_Arcelin_ConA 38 276 IPR001220 GO:0030246
Gabi2010g00007 663 ProSiteProfiles Protein kinase domain profile. 354 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2010g00007 663 FunFam Lectin-domain containing receptor kinase A4.3 431 645 - -
Gabi2010g00007 663 Pfam Protein kinase domain 354 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2010g00007 663 FunFam L-type lectin-domain containing receptor kinase IX.1 339 430 - -
Gabi2010g00007 663 Gene3D Transferase(Phosphotransferase) domain 1 431 645 - -
Gabi2010g00007 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Gabi2010g00007 663 Pfam Legume lectin domain 38 282 IPR001220 GO:0030246
Gabi2010g00007 663 Gene3D - 35 291 - -
Gabi2010g00007 663 Gene3D Phosphorylase Kinase; domain 1 338 430 - -
Gabi2010g00007 663 SUPERFAMILY Protein kinase-like (PK-like) 338 645 IPR011009 -
Gabi2010g00007 663 SMART serkin_6 354 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2010g00007 Gabi-Chr2010 162073 164064 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2010g00007 24 643 Receptor kinase-like Gene Family AT5G10530 43.750 2.42e-163 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gabi2010g00007 Pkinase 9.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2010g00007 - - cam:101492002 739.569