Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2010g00006 ATGGCTGGTTGTGGTTGGCATAATGGTGGTGTCCATGCAACAACTCCTCTGTTGTGTTATGCAATGGGAACCATTTTGTTCTTCTTGATAATCCCTCTTGCACATGCTCAGCCTGTGTGTTTTGATTACCCCAACTTTTTAAATGTTGATCAAAAGCAGTTAAACATTGAAGGAGATGCTTCTATTTCAGGTTCTCGCATTGAGCTCACAGCAAACACAACGGGCCTAGTAAGCGAATGGTTTGGGAGTGTTGGGCGGATCACAAGATCCAACCTTATTCATATTTGGCAAAAAGACTTCACAACCAACTTTTCCTTCATTGTTTCTTCAAATAACAGTGCTTTTGGAGATGGTTTGGCATTCTTCCTAGCAAGCCCAAATCTCCCAAGTACAACAGATTTAGGAGGCGGAGGAGGTCTTGGTCTTCTTCCTGCAGGCATACCTGTCTCCATTGATCCCTATTCATTTGTGGCAGTGGAATTTGACACTTACCAAGATTATTGGGACCCACCTTACCAGCATGTGGGTGTGAATATCAACTCTATGAAGTCTGAAAAACAAAAGAAATGGTTTATAGATGTTGCAGAAGGCGATGTTTGTTACTGTAGTGTTCAATACAGTTCAGGAAATAATAATTTAAATGTTTCTTTCACTGTACGCAAAATCGGTGATGGGCCTATAACACAGACTCCACAGTTCTTTTCATACCACATTGATATCACAGAGCACTTACCAGAGTCGGTTTATGTTGGCATATCAGCTGCAACAGGAACATATTTTGAGGAACATACCCTGCTTTCATGGTCATTTAGGACAAGCCATCCAATTCATGTCCATCCTAAGAAGGAAAGCAAGTTAAGCAAGAAAAAATTATTGGAAGGAATCGGAATCGGAATCGGTGTAGGTTTATCTTTGAGTTTAGTAGGGTTGGTCCACATTTTATTACCGAAGAAGAATAAAGGATATGAAGAAGAACCAACATCGGAAACCAGTTCTGATCTTAAGATGGATGCTGAATTCCTCCAAAGCAGCACTGGACCTAAAAAGATTAGTTATTATGAATTGGCATCTGCAACAAACAACTTCGATGAGACAAAAAAGCTTGGGCAAGGTGGTTTTGGCGGTGTTTATAAAGGCTATTTGAAAGACTCTAGCTCCTTTGCTGCTATAAAGAGGATATCAGCAAATTCTAGGCAGGGTATAAAGCAATACGAAGCAGAAGTTAAGATCATTAGCCAATTGAGGCATAGGAATTTGGTAAAACTCACTGGTTGGTGTCACAAGAAGAATGATCTCCACTTGATATACGAGTACTTGCCTAATGGAAGCTTAGACTCTCATCTTTTTCGCGGAGAAAGCATCTTGCCGTGGCAGGTGAGGTACAACATAGCTCTGGGCTTGGCTTCAGCATTGTTTTACCTTCAGGAAGGATGGGAAAAATGTGTGCTTCATAGGGACATCAAATCAAGCAACATAATGTTGGACTCCAACTTCAATGCTAAGCTTGGCGATTTTGGCCTAGCTAGGCTGGTTGATCATGAGAAAGGGTCACAAACCTCAGTTGTGGCTGGGACCATGGGTTACCTTGCTCCTGAATATATAAACACAGGCAAGGCTAGAAAGGAATCAGACATATTCAGTTTTGGGGTTGTTTTGTTGGAGTTAGCCAGTGGAAGAAAAGCCATTCACCACAATGAAAAGGAGGGTGAAGTATCATTAGTTGAGTGGATTTGGGAGCTTTATGGAATTAGAAATCTGCTTGCAGCAGCAGACCCAGAGCTATGTGGGGCATTTGATGTGCAGCAAATGGTATGTTTACTGGTAGTTGGGTTATGGAGTGCTAATCCAGATTGCACATCCAGACCCTGTATAAGAAAAGTGATTAAGGTGCTTGATTTTGAAGCTCCATTACCAATTCTCCCACAACAGATGCCTGTTCTAGCATATCTCCCTCCAACAACAAAAGAATTTTTTTATTCAGTTTCATCTTCCTCTCCTACAATTTCTGCTACCGCTGCCAATTATGTTGCTCAAATGAATATGCTTCCAATGCTTAATGGGGCAAATTTCAAGTTGTGGAAAGAGAATGTGAAAATTGTTCTCGGCCACATGGATCTCGACAATGCGCTAAGGACTGAGAAACCCACTTCCACTCAGGAAAATCCAAAAACGGATAAAATTGAGAAGTGGGAACGCTCAAATCGCATGTGTCTGATGATCATGAAACGTTGCGTTCCGGAGGCGTTTAGGGGCTCGATTGTTGAGACTACTGATGCCAAGTTGTTTCTGAAGGAACTCGAGCAATACTTTGCTCGAAATGAAAAGGCTGAAATTGGTCAAACCTTGTCCAAACTCATAAACATGCGGTATAAAGGAAAGGGAAACATAAGGGAGCATATTATGGAAATGTCTAATCTTGCTGGAAAACTAAAGGCATTAAAGTTAGAGCTGCCCTATGAGTTGCTTATGTACTTAGTTATTATCTCTCTTCCTGCACAATACAGTCAATTTGTGTTAGGCAAGAAAATTAAGGCCATCAGATCTGATCGTGGTGGTCAATACTATGGTAGATCTGATGGATCGGGTGAACAACGTCCAAGGCCCTTTGCGATCTTCCTAAAGGAGTATGGAATCGTGCCGCAATACACAATGCCAGGTAAACCTAGCATGAATGGTGTTGCGGAAAGGCGAAACCGGACTCTTAAAGACATGAAAATTTAG 2721 0.4153 MAGCGWHNGGVHATTPLLCYAMGTILFFLIIPLAHAQPVCFDYPNFLNVDQKQLNIEGDASISGSRIELTANTTGLVSEWFGSVGRITRSNLIHIWQKDFTTNFSFIVSSNNSAFGDGLAFFLASPNLPSTTDLGGGGGLGLLPAGIPVSIDPYSFVAVEFDTYQDYWDPPYQHVGVNINSMKSEKQKKWFIDVAEGDVCYCSVQYSSGNNNLNVSFTVRKIGDGPITQTPQFFSYHIDITEHLPESVYVGISAATGTYFEEHTLLSWSFRTSHPIHVHPKKESKLSKKKLLEGIGIGIGVGLSLSLVGLVHILLPKKNKGYEEEPTSETSSDLKMDAEFLQSSTGPKKISYYELASATNNFDETKKLGQGGFGGVYKGYLKDSSSFAAIKRISANSRQGIKQYEAEVKIISQLRHRNLVKLTGWCHKKNDLHLIYEYLPNGSLDSHLFRGESILPWQVRYNIALGLASALFYLQEGWEKCVLHRDIKSSNIMLDSNFNAKLGDFGLARLVDHEKGSQTSVVAGTMGYLAPEYINTGKARKESDIFSFGVVLLELASGRKAIHHNEKEGEVSLVEWIWELYGIRNLLAAADPELCGAFDVQQMVCLLVVGLWSANPDCTSRPCIRKVIKVLDFEAPLPILPQQMPVLAYLPPTTKEFFYSVSSSSPTISATAANYVAQMNMLPMLNGANFKLWKENVKIVLGHMDLDNALRTEKPTSTQENPKTDKIEKWERSNRMCLMIMKRCVPEAFRGSIVETTDAKLFLKELEQYFARNEKAEIGQTLSKLINMRYKGKGNIREHIMEMSNLAGKLKALKLELPYELLMYLVIISLPAQYSQFVLGKKIKAIRSDRGGQYYGRSDGSGEQRPRPFAIFLKEYGIVPQYTMPGKPSMNGVAERRNRTLKDMKI 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2010g00006 906 SMART serkin_6 362 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2010g00006 906 ProSitePatterns Legume lectins beta-chain signature. 157 163 IPR019825 -
Gabi2010g00006 906 SUPERFAMILY Concanavalin A-like lectins/glucanases 37 276 IPR013320 -
Gabi2010g00006 906 FunFam L-type lectin-domain containing receptor kinase IX.1 347 438 - -
Gabi2010g00006 906 CDD lectin_legume_LecRK_Arcelin_ConA 39 274 IPR001220 GO:0030246
Gabi2010g00006 906 Gene3D - 39 283 - -
Gabi2010g00006 906 Pfam gag-polypeptide of LTR copia-type 730 838 - -
Gabi2010g00006 906 ProSiteProfiles Protein kinase domain profile. 362 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2010g00006 906 ProSiteProfiles Integrase catalytic domain profile. 826 906 IPR001584 GO:0015074
Gabi2010g00006 906 Gene3D Transferase(Phosphotransferase) domain 1 439 650 - -
Gabi2010g00006 906 Gene3D - 831 906 IPR036397 GO:0003676
Gabi2010g00006 906 Pfam Protein kinase domain 363 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2010g00006 906 Gene3D Phosphorylase Kinase; domain 1 347 438 - -
Gabi2010g00006 906 Pfam Legume lectin domain 41 276 IPR001220 GO:0030246
Gabi2010g00006 906 ProSitePatterns Serine/Threonine protein kinases active-site signature. 482 494 IPR008271 GO:0004672|GO:0006468
Gabi2010g00006 906 Coils Coil 796 816 - -
Gabi2010g00006 906 FunFam Lectin-domain containing receptor kinase A4.3 439 651 - -
Gabi2010g00006 906 CDD STKc_IRAK 368 632 - -
Gabi2010g00006 906 SUPERFAMILY Protein kinase-like (PK-like) 346 654 IPR011009 -
Gabi2010g00006 906 ProSitePatterns Protein kinases ATP-binding region signature. 368 391 IPR017441 GO:0005524
Gabi2010g00006 906 PANTHER - 72 641 - -
Gabi2010g00006 906 SUPERFAMILY Ribonuclease H-like 839 904 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2010g00006 Gabi-Chr2010 138013 148788 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2010g00006 21 649 Receptor kinase-like Gene Family AT5G10530 43.344 2.07e-161 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gabi2010g00006 Pkinase 8.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2010g00006 - - cam:101492002 757.288