LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2010g00005	ATGGCTTCTTGGCATATTGGTCATCATACTCCAAATCTTATTTTCCGTTATGCAATGGGAACCATTTTAATCCTCCAAGCAATCCATCATGCAAATCCACTATCATTCAATTACCCCAACTTTAAAGATGGTGATGTCAAGAGGGAAGGTGATGCTTATATTTTGAAAGAAGCTATCCAAATCTCCATGAACACCATTGACCAAAACAACAATTACAGTGTTGGCCGAGTCACATGTTACCGACAGATGCTCCTCTGGGATATGAAATCTCGAAAGCTTGCTGACTTCACTACCAAATTTTCCTTTGTTATTTTTTCTGATCAGAGTTATTATGGAGATGGAATGGCATTCTTCCTAGCAGATCCAAATTTGCCACTTCTGATCAAAATTGAAGAAGGAGGTGGTCTTGGCCTTGTGGATGGCAACCAAGTATTGAAGTCAACTCAACACTCATTTGTAGCAGTGGAGTTTGACACCTTCTCAAATCCATGGGACCCTCAAGGCACTCATGTAGGCTTGAATTTCAACTCTATGAGGTCTAACATAACTAAGCCATGGTTGACAGATATTCGAGAAAAGAGAGTTTATAATTGTAGCATCGAGTACAATTCCAGCACTCTTAATTTAAACGTTTCATTCACTGTGTACATTGATGATAATCCAGCTGAAGAATACATATTATACAAGATTGATTTGAGAGATTACTTACCAGGGTCAGTTATTTTTGGCTTCTCTGCTGCAACAGGAATATTTTATGAAGTGCATACTCTGGAGTCATGGTCATTCAGTTCAAGTCTACAAAGTGATGAGGATATCACAAATCAGATAACACCAATAGCAGCCCCACCACGCCTCAATGCTATTTCTAAAAAAGGAAAGAAGATAGGATTGTGGGTGGGGCTTGGAATTGGTATAGGCTTGGCTGTGAGTTTGTCAGGGATGGTTTGTGGTTTATTATGGAAGAGGAGTAAAGGGAAAGAAGAGTTAGTTTTTGATCTTAACATGGATGACGAATTCCAGAAGGGAACTGGACCTAAGAGGTTTTCCTATAATGAACTAGTTAGTGCAACAAACAAATTTGCAGAGTCAGACAAGCTGGGGCAAGGTGGTTTTGGTTGTGTGTATAAAGGTTATTTGAAAGACTTAAACTCCTATGTTGCTATCAAGAGGATATCAAGAGAGTCTACACAGGGGATAAAGGAATATGCAACTGAAGTGAAGGTCATAAGCCAATTGAGACATAGAAATCTAGTACAACTTGTTGGTTGGTGCCACAGGAAGAATGATTTCCTCCTCATGTATGAGTTCATGCCAAATGGAAGCTTAGATTCCCATCTATACGGTGGGAAAAGCTTCTTGACATGGACAGTGAGGTATAATATAGCTCTAGGCTTGGCTTCAGCATTGCTTTACCTACAAGAAGAATGGGAGCAATGTGTGATTCACAGGGACATTAAACCAAGCAACATTATGTTGGATTCATGTTTCAATGCTAAGCTTGGTGATTTTGGTTTAGCTAGGTTGGTGGATCATGAGAAAGGATCACAAACCACACTTATAGCCGGGACTAGGGGCTATATTGCCCCTGAATATTTCACTTCAGGAAAGGCTACAAAGGAATCTGATATATACAGTTTTGGGGTTGTGTTATTGGAGATTGCATGTGGAAGGAAACCCATTGACCTAGCAGCCAATGAGGGTCAAATAACTGTAGTTGAGTGGGTTTGGGAGCTTTATGGATTGGGAAAGTTCCTCGAAGCAGCTGACACTAAGTTATGTGGAGCATTTGATGAGCAACAAATGGAACGTTTAGTGGTTGTTGGCCTTTGGTGTGTTCATCCAGATTATTCATCAAGGCCTTCTATAAGTCAAGTGATTCAGGTGCTTAAATTTGAATCTCCTTTACCAATTCTCCCAGAAAACATGCCTGTGCCAACCTATCTTCCTCCAACAATAAGAGCACTTTTTTCTTCTGTTTCATCTTTCCCTTTTATAAAGTTTGTAATAGATGCAGTGTAA	2019	0.3982	MASWHIGHHTPNLIFRYAMGTILILQAIHHANPLSFNYPNFKDGDVKREGDAYILKEAIQISMNTIDQNNNYSVGRVTCYRQMLLWDMKSRKLADFTTKFSFVIFSDQSYYGDGMAFFLADPNLPLLIKIEEGGGLGLVDGNQVLKSTQHSFVAVEFDTFSNPWDPQGTHVGLNFNSMRSNITKPWLTDIREKRVYNCSIEYNSSTLNLNVSFTVYIDDNPAEEYILYKIDLRDYLPGSVIFGFSAATGIFYEVHTLESWSFSSSLQSDEDITNQITPIAAPPRLNAISKKGKKIGLWVGLGIGIGLAVSLSGMVCGLLWKRSKGKEELVFDLNMDDEFQKGTGPKRFSYNELVSATNKFAESDKLGQGGFGCVYKGYLKDLNSYVAIKRISRESTQGIKEYATEVKVISQLRHRNLVQLVGWCHRKNDFLLMYEFMPNGSLDSHLYGGKSFLTWTVRYNIALGLASALLYLQEEWEQCVIHRDIKPSNIMLDSCFNAKLGDFGLARLVDHEKGSQTTLIAGTRGYIAPEYFTSGKATKESDIYSFGVVLLEIACGRKPIDLAANEGQITVVEWVWELYGLGKFLEAADTKLCGAFDEQQMERLVVVGLWCVHPDYSSRPSISQVIQVLKFESPLPILPENMPVPTYLPPTIRALFSSVSSFPFIKFVIDAV	672

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2010g00005	672	FunFam	L-type lectin-domain containing receptor kinase IX.1	32	275	-	-
	Gabi2010g00005	672	CDD	STKc_IRAK	366	630	-	-
	Gabi2010g00005	672	FunFam	Lectin-domain containing receptor kinase A4.3	437	649	-	-
	Gabi2010g00005	672	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	480	492	IPR008271	GO:0004672\|GO:0006468
	Gabi2010g00005	672	ProSitePatterns	Protein kinases ATP-binding region signature.	366	389	IPR017441	GO:0005524
	Gabi2010g00005	672	CDD	lectin_legume_LecRK_Arcelin_ConA	34	260	IPR001220	GO:0030246
	Gabi2010g00005	672	SUPERFAMILY	Concanavalin A-like lectins/glucanases	33	269	IPR013320	-
	Gabi2010g00005	672	SUPERFAMILY	Protein kinase-like (PK-like)	344	658	IPR011009	-
	Gabi2010g00005	672	Gene3D	Transferase(Phosphotransferase) domain 1	437	649	-	-
	Gabi2010g00005	672	ProSitePatterns	Legume lectins beta-chain signature.	153	159	IPR019825	-
	Gabi2010g00005	672	Pfam	Legume lectin domain	34	274	IPR001220	GO:0030246
	Gabi2010g00005	672	SMART	serkin_6	360	635	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi2010g00005	672	Gene3D	Phosphorylase Kinase; domain 1	345	436	-	-
	Gabi2010g00005	672	FunFam	L-type lectin-domain containing receptor kinase IX.1	345	436	-	-
	Gabi2010g00005	672	PANTHER	-	68	632	-	-
	Gabi2010g00005	672	Pfam	Protein kinase domain	361	627	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi2010g00005	672	ProSiteProfiles	Protein kinase domain profile.	360	638	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi2010g00005	672	Gene3D	-	32	279	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2010g00005	Gabi-Chr2010	121998	124016	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2010g00005	34	647	Receptor kinase-like Gene Family	AT5G10530	46.900	1.84e-179	523

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Gabi2010g00005		Pkinase	6e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2010g00005	-		-	gmx:100780181	1023.85