Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2010g00003 ATGGGGAGAGGAAAGATCGCCATTCGAAGGATTGACAATACGACTAGCCGGCAAGTGACTTTTTCCAAGAGAAGAAGTGGGTTGCTGAAGAAAGCTAGAGAACTGTCCATTCTCTGTGATGCAGAAGTTGGATTGATTGTGTTCTCTTGCACTGGCAAGCTTTATGACTATGCAAATACCAGCATGAAATCTGTTATTGAGCGTTATAACAAGTTAAAAGAGGACCATCATCAGCTAAGGAATCTTGCTTCAGAAGTCAAGTTTTGGCAGAGAGAATCAGCAAGCTTGAGGGAGCAGCTGCAGAACATGCACGAATGCCACAGGCAATTGATGGGTGAAGAACTTTCTGGTTTGGGTATCAAAGAGTTACTAAACCTGGAAAATCAACTCGAGACGAGTTTAAAGGGTGTTCGCATGAAAAAGGATCAAATTTTGACTGATGAAATTAAAGAAATACACCTAAAGGGAAGCCTCATTCATCAAGAAAATGTAGAACTTCATAAAAAGATAGACCTCATCCGTAAGGAAAATGCAGAATTACAGAAGGTTATGGAAGCAAGACGTAAGAAAGAAGAAGATGCAACATCCAATCCTCGATACACTATCAGCTATGGATATGACATACTCACGCCTACGAGTCTCAAGCTAAGCCAGCCATCGCCTCAACACAGTGAACCACCGGCCATAGCAATGAAACTGGGGTATTCCCTCAACCTGATGAAGTTAAATGCTCAGCTTGAGTCTATAATTTTTTATCCTTAA 762 0.4134 MGRGKIAIRRIDNTTSRQVTFSKRRSGLLKKARELSILCDAEVGLIVFSCTGKLYDYANTSMKSVIERYNKLKEDHHQLRNLASEVKFWQRESASLREQLQNMHECHRQLMGEELSGLGIKELLNLENQLETSLKGVRMKKDQILTDEIKEIHLKGSLIHQENVELHKKIDLIRKENAELQKVMEARRKKEEDATSNPRYTISYGYDILTPTSLKLSQPSPQHSEPPAIAMKLGYSLNLMKLNAQLESIIFYP 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2010g00003 253 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi2010g00003 253 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi2010g00003 253 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Gabi2010g00003 253 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi2010g00003 253 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi2010g00003 253 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi2010g00003 253 Coils Coil 163 193 - -
Gabi2010g00003 253 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Gabi2010g00003 253 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi2010g00003 253 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 193 - -
Gabi2010g00003 253 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Gabi2010g00003 253 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi2010g00003 253 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi2010g00003 253 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Gabi2010g00003 253 Coils Coil 62 99 - -
Gabi2010g00003 253 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2010g00003 Gabi-Chr2010 65511 79392 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2010g00003 1 239 MADS-box Gene Family AT2G14210 60.581 3.40e-93 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi2010g00003 K-box 6.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2010g00003 K09264 - gmx:100808145 356.681