Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2010g00001 ATGGGCAGAGGGAAGACTGTGATCAAAAGGATTGACAATACCACAAACAGGCAAGTGACTTTTTCAAAAAGAAGAAATGGGCTCCTCAAAAAGGCTAGGGAGCTCTCTATCCTTTGTGATGCTGAAATTGGACTTATAATCTTCTCTAGTACTGGCAAACTTTATGATTTTGCAAGCTCAAGCATGAAATCCATCATTGAACGCTATAATGGACAAAAGGGTGAACGAAATCTGCTCGTGGATCCTGCTTCAGAAATCAAGTTTTGGCAGAGGGAGGCAGCAAGTTTAAGAGAACAACTGCAGTATGTGCACCAATATAATAGGCAATTGATGGGTCGTGAATTATCTAGTTTGGGCATAAAAGATCTGCGCAATTTGGAAAACCAGATGGAAATGAGTTTAAGGAGCATCCGTACGAAAAAGGTATGA 429 0.4056 MGRGKTVIKRIDNTTNRQVTFSKRRNGLLKKARELSILCDAEIGLIIFSSTGKLYDFASSSMKSIIERYNGQKGERNLLVDPASEIKFWQREAASLREQLQYVHQYNRQLMGRELSSLGIKDLRNLENQMEMSLRSIRTKKV 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2010g00001 142 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Gabi2010g00001 142 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi2010g00001 142 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 140 - -
Gabi2010g00001 142 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Gabi2010g00001 142 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Gabi2010g00001 142 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi2010g00001 142 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi2010g00001 142 ProSiteProfiles K-box domain profile. 86 142 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi2010g00001 142 Pfam K-box region 84 141 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi2010g00001 142 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi2010g00001 142 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi2010g00001 142 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi2010g00001 142 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi2010g00001 142 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2010g00001 Gabi-Chr2010 11021 22518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2010g00001 1 141 MADS-box Gene Family AT4G37940 66.667 1.18e-67 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi2010g00001 K-box 7.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2010g00001 K09264 - mnt:21397917 220.705