Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi200g00006 ATGGTCTGCACTGCCAATGATTTACAAGAATGGAAAGATTTTCCCAAGGGACTCAAGGTTCTTCTCCTTGAGGGAGACAACACTTCTGCTTCTGAGATAAGAACAAGGCTTGAGGCCATGGACTATAATGTTTCTACATTCTTCCATGAGAATGAAGCCTTGTCAGCAATCTCAAGTAGGCCCAAAGACTTCCACATTGCCATAGTAGAGGTGAGTTCAAGCAGTACCCAGGGAGGTTTCAAATTTCTTGAGAATGCCAAGGACTTGCCAACCATTATGACTTCAAACAATGATTGCCTGAACACCATGATGAAGTGTATAGCGCTTGGCGCAGTTGAGTTCCTTAGGAAACCACTCTCTGAGGACAAGCTCAGAAATATCTGGCAACATGTGGTTCACAAGGCATTTAATGCTGGGGCAAGTGTGTCTGAATCACTAAAGCCTTTCAAAGAATCTGTAGTGTCCATGTTGCAGCTCCAAACAGACAATGAACAACATGAAAGTAGAATCTCAATTGATTTAGAGAAAGTATCCGGGTTTACTAATAAAGACCATGAGCAGTGTCCTGGAAGTGATAAATATCCAGCTCCTTCAACCCCACAATTGAAACAGGGGGGAAGATTACTGGATGATGGGGATTGCCAAGAGCAGACTAATTGCTCAACTGAAAAAGAAAGTGGGGAACATGATGGAGAGTCTAAATCTGTCGAAACTACATGTGGAAATTTGCATGCTGAAAGTACTCCTCAACAAAGGGAATCTGAAAATACTCTGGTTAAGGAGGAAGAGGATTTTGCTGATGCTTCTAAGGGTGAGAGTGTGGTTTCTCCACATCCACAAAATAGAAAGGCTCTCAGAAACACTGACAGCAATACAAAATCTTCAAATAAAGCCGGTGTTCATAGTGATTCATGTGAGATAAAAGCTAATAGGAAGAAGATGAAAGTAGACTGGACGCCTGACATGCACAAAAAATTTGTGAAGGCAGTGGAACAACTAGGCATTGACCAAGCCATTCCTTCTAGAATATTGGATCTAATGAAAGTGGAGGGTTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAATATAGAATGCATAAGAGACAAATATTGCCCAAGGAAGGAGGTCGGAAATGGCCAAATCAAAGAGATTCAATGCAAAGAAGCTATTGTCTTCAAAGACCAATTATGGCCTATCCTCCATATCATTCTAATCACACACCTTCTCTGGCTCCTGTATATCCTATGTGGGGACAACCTGGCAGTCAAATGGCTGGCATGCAGATTTGGGGCTCTCCTGGTTATCCCTTGTGGCAGCCTACAGAAAGTTGGCACTGGAAACCATTTCCGGGGGTGCATGCAGATGCATGGGGCTGCCCGGTTTTACCACCTCCTCAAGCTCCTTGTTTTTCCTACTCTCAGCAGAATATGCCTGCATTGTGCGATGCTAATGCAGCGGATTACAAGTTTAGCATGCCACTAAGTTCCTTTGAGCATTATCCAGCAGAGGAGGTTGTTGACAATGTTGTGAAGGAGGCAATAAATAAGCCATGGCTACCCTTGCCCTTGGGTCTCAAACCTCCTTCCATAGATAGTGTGGTTGCTGAGCTTTCCAGACAAGGAATTTCCAACATCCTTCCTGGCAGCAAGGGTTGCTGA 1662 0.4374 MVCTANDLQEWKDFPKGLKVLLLEGDNTSASEIRTRLEAMDYNVSTFFHENEALSAISSRPKDFHIAIVEVSSSSTQGGFKFLENAKDLPTIMTSNNDCLNTMMKCIALGAVEFLRKPLSEDKLRNIWQHVVHKAFNAGASVSESLKPFKESVVSMLQLQTDNEQHESRISIDLEKVSGFTNKDHEQCPGSDKYPAPSTPQLKQGGRLLDDGDCQEQTNCSTEKESGEHDGESKSVETTCGNLHAESTPQQRESENTLVKEEEDFADASKGESVVSPHPQNRKALRNTDSNTKSSNKAGVHSDSCEIKANRKKMKVDWTPDMHKKFVKAVEQLGIDQAIPSRILDLMKVEGLTRHNVASHLQKYRMHKRQILPKEGGRKWPNQRDSMQRSYCLQRPIMAYPPYHSNHTPSLAPVYPMWGQPGSQMAGMQIWGSPGYPLWQPTESWHWKPFPGVHADAWGCPVLPPPQAPCFSYSQQNMPALCDANAADYKFSMPLSSFEHYPAEEVVDNVVKEAINKPWLPLPLGLKPPSIDSVVAELSRQGISNILPGSKGC 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi200g00006 553 Gene3D - 18 142 - -
Gabi200g00006 553 NCBIfam myb-like DNA-binding domain, SHAQKYF class 313 368 IPR006447 GO:0003677
Gabi200g00006 553 SUPERFAMILY Homeodomain-like 312 370 IPR009057 -
Gabi200g00006 553 Gene3D - 309 371 - -
Gabi200g00006 553 SMART REC_2 18 128 IPR001789 GO:0000160
Gabi200g00006 553 MobiDBLite consensus disorder prediction 265 306 - -
Gabi200g00006 553 MobiDBLite consensus disorder prediction 274 301 - -
Gabi200g00006 553 FunFam Two-component response regulator 309 372 - -
Gabi200g00006 553 SUPERFAMILY CheY-like 16 134 IPR011006 -
Gabi200g00006 553 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 310 369 IPR017930 -
Gabi200g00006 553 MobiDBLite consensus disorder prediction 181 237 - -
Gabi200g00006 553 FunFam Two-component response regulator-like APRR2 17 143 - -
Gabi200g00006 553 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 548 IPR044825 GO:0003700|GO:0045893
Gabi200g00006 553 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Gabi200g00006 553 Pfam Myb-like DNA-binding domain 316 365 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi200g00006 Gabi-Chr200 77124 85119 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi200g00006 1 546 Response Regulator Gene Family AT4G18020 49.826 5.21e-144 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gabi200g00006 Myb_DNA-binding 4.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi200g00006 - - gmx:100777535 900.197