LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2006g00008	ATGAGAAAGAACAAAGTTCCCAATGAGTTCAGCCTCTATGTGCTTTTGTTTCTCCTTCAACTATTGTTCCCTCTGCAGGTTAACTCATACAATCCCGTTGATGATTTTGCTGTCAGCTGTGGCGGCTCCGCAACCATTCAATTTCAAAATCGGACCTGGGTTGGAGACGTTGACACCAAACTGTTTTCCATCATTGAATCAGAAACTAGTTCACCTTCTGTCAAAACCAATGCTCCTAACTCTCCTTCTTCAGTTAACTCAGTTCCATTTGGCTCCGCACGTATCTCTCACTCCAAATTCACCTACTCCTTTCCCGTCACTAACGGCCCAAAGTTCGTTCGGCTTCACTTTTATCCAACATCGTATGCTAACTTCAAACCCTACAACACCCTCTTCTCTGTTAAAATAGACAACAACAACAACCTTACCCTTCTTAAAGACTTCAACGCCTCACTTTTTGTTGTCAAAGATGAATCAGAGACAATCACTAAAGAATACTGTGTCAACGTGGAAACAGGTGAGAGGCTAAACATAACCTTCATTCCCAGCACTAATGATTCCGATGCTTATGCTTTTATCAACGGGATCGAGGTTGTGTCTATGCCTCCCTTTCTCTATTACACTGATCCCAATGACTTAGGGCTTAAGCTTGTGGGTCATGACACGCAGTACCAAATTCACAAAGAGAAAGCTCTTGAGACACTTCACAGAGTCAACGTTGGTGATCCTCAGGTTCCACCAAGTCAAGATACTGGTATGTTTAGGAATTGGGACAACGATCTTCCTCGCTACTTGGAGAAGCAATATCCATTTAGTGTATCAAGTGGATTTGCACTTCAATTAAATTATGAAAATAATGTTGTTCCGAATTACACTGCACCAGCTGTTGTGTACTTAACTGCCAGAAGTTACGGGATGCATGCCACTGAGAATTATAATGTTACTTGGGATTTTGTTGTGGACTCAGAGTTTACTTATATGGTTAGGTTACATTTCTGCGAGTTTGATCAGAAGATTCAGGATTATGGTGATAGAGCTTTTCAGATTTTTATAGCTGAAACTTTGGCTGAGCCATATGCAGATGTGATTGGCTGGAGTGGTGGTAATTTAGTTCCCGTTCATAGGGATTATGCTGTGTTTATGTCCACCCAAGGAAACTCTGAGAAAGTTAATCTTTCTATCAAATTGCAACGACTGCAAGAGGGAATGGTGACCAATTACCATGATGTCATATTGAATGGCATCGAAGTTTTCAAGATAAGTGACGAGAATAACAATCTCGCAGGACCGAATCCTGAACCAATTTTATCTCCACCGAAACAAGTGTTGCAAACCCAATCATCCAAAAGCTCGAAGACCACTGTGGTTATCATTGCCGTGGTTGCAGTTTCAGGCCTCGTGCTAGCATCTGTTATCGGCATCATAGTTTTTCAACGAAGGAGAAGAGGCCATCATGACATGGAAGATAATTCATGGAAGACAAAGGGTAAAGGGTCATCTTTGCCATCCCATTTGTGCCGCTACTTTACAATCGCAGAGATAAGAGCTTCCACAAACAACTTCGATGATGCTTTCATCATCGGTGTTGGAGGATTCGGCAACGTGTACAAGGGTTACATCGATGGGTCCACACCCGTTGCGGTCAAACGCCTCAAGCAGGGTTCTCAACAGGGTTTCAACGAGTTCAGGAACGAGATCGAGATGCTATCACAGCTTCGACACCTTCATTTGGTGTCCCTCATTGGTTACTGCAACGACGGCACAGAGATGATCATTGTCTATGACTTCATGCACCACGGCACTCTCTGTGAGTATCTCTATAACTCCGATGACCAGCCACTTCCGTGGAAGCAGAGGCTCGAGATCTTATTGGGTGCAGCAAGAGGGCTCCATTATCTTCATGCGGGTGCGGAGCACAATATCATTCATCGTGACGTGAAGAGCACCAACATCTTATTGGATGAGAAATGGGTGGCTAAGGTTTCTGACTTCGGGTTATCCAAAGTGGGACCCACTGGGACTTCGATGACCCACGTCAGCACAGTCGTGAAGGGGAGCGTTGGGTATTTGGACCCGGAGTACTACAAGCGTCAAAGGTTGACTTTAAAGTCTGACGTGTACTCGTTCGGTGTGGTGCTTCTTGAGGTATTGTGTGCGAGGCCACCTTTGGTTCGTACGTTGGACAAGCAGAAAGCAAGTTTGGTTGATTGGGTTCGGAGATGTTACGAAGAAGGAGAGATTGATCAGACGGTGGATCCATTTCTAAAGGATTCTATTACGGATGAGTGTTTGAAATGTTACTGCCAGATGGCGTTGAGTTGTTTGCTTGATGATGGGAATCAACGGCCATCCATGAGTGATGTAGTTGGGACCCTTGAGTTTGCAATGCAGTTGGTGGACAGTGAGGAAGATAAGAAGTTTGGTGGGACCCAAGAAGTGGGAGACAGGGAGAAAATGCTACAATTACCGCAGTTTAAGAGCGATGAAGGGAGTGATGTGCGTTTCACTAGTAGTGATGAATCGGGGTCCAAGTCCAGCAACGTTACCACAGTCTCAGCCAGTACTGAGGAACACGCTTTGGTTTCTGCTTTGGTGTTCTCCGAGATTGGGAATCCAAGAGCACGATAG	2628	0.4471	MRKNKVPNEFSLYVLLFLLQLLFPLQVNSYNPVDDFAVSCGGSATIQFQNRTWVGDVDTKLFSIIESETSSPSVKTNAPNSPSSVNSVPFGSARISHSKFTYSFPVTNGPKFVRLHFYPTSYANFKPYNTLFSVKIDNNNNLTLLKDFNASLFVVKDESETITKEYCVNVETGERLNITFIPSTNDSDAYAFINGIEVVSMPPFLYYTDPNDLGLKLVGHDTQYQIHKEKALETLHRVNVGDPQVPPSQDTGMFRNWDNDLPRYLEKQYPFSVSSGFALQLNYENNVVPNYTAPAVVYLTARSYGMHATENYNVTWDFVVDSEFTYMVRLHFCEFDQKIQDYGDRAFQIFIAETLAEPYADVIGWSGGNLVPVHRDYAVFMSTQGNSEKVNLSIKLQRLQEGMVTNYHDVILNGIEVFKISDENNNLAGPNPEPILSPPKQVLQTQSSKSSKTTVVIIAVVAVSGLVLASVIGIIVFQRRRRGHHDMEDNSWKTKGKGSSLPSHLCRYFTIAEIRASTNNFDDAFIIGVGGFGNVYKGYIDGSTPVAVKRLKQGSQQGFNEFRNEIEMLSQLRHLHLVSLIGYCNDGTEMIIVYDFMHHGTLCEYLYNSDDQPLPWKQRLEILLGAARGLHYLHAGAEHNIIHRDVKSTNILLDEKWVAKVSDFGLSKVGPTGTSMTHVSTVVKGSVGYLDPEYYKRQRLTLKSDVYSFGVVLLEVLCARPPLVRTLDKQKASLVDWVRRCYEEGEIDQTVDPFLKDSITDECLKCYCQMALSCLLDDGNQRPSMSDVVGTLEFAMQLVDSEEDKKFGGTQEVGDREKMLQLPQFKSDEGSDVRFTSSDESGSKSSNVTTVSASTEEHALVSALVFSEIGNPRAR	875

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2006g00008	875	CDD	STKc_IRAK	527	793	-	-
	Gabi2006g00008	875	FunFam	FERONIA receptor-like kinase	35	202	-	-
	Gabi2006g00008	875	Gene3D	Phosphorylase Kinase; domain 1	484	596	-	-
	Gabi2006g00008	875	Gene3D	-	36	201	-	-
	Gabi2006g00008	875	Gene3D	-	230	421	-	-
	Gabi2006g00008	875	SMART	serkin_6	521	799	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi2006g00008	875	Pfam	Protein tyrosine and serine/threonine kinase	527	790	IPR001245	GO:0004672\|GO:0006468
	Gabi2006g00008	875	SUPERFAMILY	Protein kinase-like (PK-like)	500	796	IPR011009	-
	Gabi2006g00008	875	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	641	653	IPR008271	GO:0004672\|GO:0006468
	Gabi2006g00008	875	FunFam	Receptor-like protein kinase FERONIA	597	813	-	-
	Gabi2006g00008	875	ProSiteProfiles	Protein kinase domain profile.	521	795	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi2006g00008	875	Pfam	Malectin-like domain	38	420	IPR024788	-
	Gabi2006g00008	875	MobiDBLite	consensus disorder prediction	820	854	-	-
	Gabi2006g00008	875	Gene3D	Transferase(Phosphotransferase) domain 1	597	814	-	-
	Gabi2006g00008	875	ProSitePatterns	Protein kinases ATP-binding region signature.	527	549	IPR017441	GO:0005524
	Gabi2006g00008	875	MobiDBLite	consensus disorder prediction	836	854	-	-
	Gabi2006g00008	875	PANTHER	OS03G0124300 PROTEIN-RELATED	14	494	IPR046957	GO:0004672
	Gabi2006g00008	875	FunFam	receptor-like protein kinase FERONIA	484	596	-	-
	Gabi2006g00008	875	FunFam	FERONIA receptor-like kinase	230	421	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2006g00008	Gabi-Chr2006	61144	63936	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2006g00008	30	875	Receptor kinase-like Gene Family	AT3G51550	46.772	0.0	722

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Gabi2006g00008		Malectin_like	2.1e-37	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2006g00008	-		-	mtr:25497555	1021.54