Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2005g00005 ATGGAGTATTTGCATGACACTTTTTCCTCTGTTCCTATATCTTCCGAGTCCCTGGACTCAATTCTACCTGCTGTAGGTCGACGCGCAAGACATATGATCATCGGCAACATTGAAGGACGTGACATATTGCAAATGGATGTGATAGTTTGCATTGCCACTGGCCTTAGTGAGGAATATGACGAACATAATATTGATCACCAGAGCGTGTCTATATCAACCCTTGTGAATTCCTTGGAAAAAGTCACAATCAATCACGATGCTTCTTCTAATTTGGATGAGACATGTTCTATTTGTTTGGAGGAGTTGGGCGATGGATCAAATTCAAAGCTTGTCCGCACCAAATGCTCGCATGTTTTTCATGAAGATTGTCTTACCCAATGGCTTCGGTATTGTAACGCTCATCAATCCTACTCTCGTCCCTTGTGTCGGTGTCAAGTTACATATGTTGATTAA 453 0.4194 MEYLHDTFSSVPISSESLDSILPAVGRRARHMIIGNIEGRDILQMDVIVCIATGLSEEYDEHNIDHQSVSISTLVNSLEKVTINHDASSNLDETCSICLEELGDGSNSKLVRTKCSHVFHEDCLTQWLRYCNAHQSYSRPLCRCQVTYVD 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2005g00005 150 ProSiteProfiles Zinc finger RING-type profile. 95 143 IPR001841 -
Gabi2005g00005 150 PANTHER SI:CH211-59O9.10 75 146 - -
Gabi2005g00005 150 SUPERFAMILY RING/U-box 94 148 - -
Gabi2005g00005 150 SMART ring_2 95 147 IPR001841 -
Gabi2005g00005 150 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 149 IPR013083 -
Gabi2005g00005 150 Pfam Ring finger domain 94 143 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2005g00005 Gabi-Chr2005 20535 20987 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2005g00005 77 144 C3H Transcription Factor Family AT5G41430 42.029 1.12e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2005g00005 - - psat:127099352 110.923