Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2005g00003 ATGTATCCTCAAAGTCCTACTATGGCATATTTGCATGACGCTTTTTCCTCTGTTCCTCTATCTTTCGAGTCCCTGGACTCAATTCTACCTGTTGTAGGTCGACACGCAAGAGATATGATCAGCGACAACATTGAAGGACTTGACATATTGCATATGGATGTGATAGTTTGCACTGCCAATGGCCTTAGTGAGGAATATCACGAACATACTATTGATCACGAGAGCGTGTTTATATCAACCCTTGTGAATTCCTTGGAAAAAGTCACATTCAATCAAGATGCTTCTTCTAATTTGGATGATACATGTTCTATTTGTTTGGAGAAGCTGGGCGATGGATCAAATTCAAATCTTGTCTGCACTAAATGCTCGCATGTTTTTCATGAAGATTGTATTACCGAATGGCTTCAGCATTGTATCGCTCATCAATCCTATTCTTGTCCTTTGTGTCGTTGTCAAGTTACATATGTTGATTAA 474 0.3924 MYPQSPTMAYLHDAFSSVPLSFESLDSILPVVGRHARDMISDNIEGLDILHMDVIVCTANGLSEEYHEHTIDHESVFISTLVNSLEKVTFNQDASSNLDDTCSICLEKLGDGSNSNLVCTKCSHVFHEDCITEWLQHCIAHQSYSCPLCRCQVTYVD 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2005g00003 157 SMART ring_2 102 149 IPR001841 -
Gabi2005g00003 157 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 156 IPR013083 -
Gabi2005g00003 157 ProSiteProfiles Zinc finger phorbol-ester/DAG-type profile. 82 138 IPR002219 -
Gabi2005g00003 157 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 81 152 - -
Gabi2005g00003 157 ProSitePatterns Zinc finger PHD-type signature. 102 149 IPR019786 -
Gabi2005g00003 157 ProSiteProfiles Zinc finger RING-type profile. 102 150 IPR001841 -
Gabi2005g00003 157 CDD RING-H2 102 150 - -
Gabi2005g00003 157 Pfam Ring finger domain 100 150 IPR001841 -
Gabi2005g00003 157 SUPERFAMILY RING/U-box 89 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2005g00003 Gabi-Chr2005 9107 9580 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2005g00003 84 151 C3H Transcription Factor Family AT5G41430 43.478 1.96e-10 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2005g00003 - - psat:127099352 105.531