Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2003g00022 ATGTCATTGAGTTTGTCAAGGCAGATTGATCTTGGATTTGAAGTTGATCTCTTCAACTTTTTTCTGGGATGTCTCATGGTGCAACTCATGTCAATCCACTGGGAGTTGGCTATTGTTGGAGCTGTTTTCTGTTACTTGCTCATGTATCTTAACTCCCATTTGGATTCTCAAACACAAAGTGAGACTTTTAACCTTGCTGAGCATGTAACTGTAGAAATTGATGATGCTAATTCAGTGCAAGTTGGAGCTGGTAGTCAATGCAACCAAGAACTTATATATACCATTTTGGGGATTGAGGAAAAAAGAGAAGACACAGTAATTTTCCCCACTGACATGGAAGCTAGACTTAGGGAGGCAATTGTTGCTGGGTTTGTTGATGAGTGCTATCACATTTACTTCACTTGGAGGAGGCAAATTTTGGACCCAAAACTACTGAAAATCGGTTTACATAAGCTTGACATCAAAGAGATCAAGAATGTACCATTGAACTACCTAGAAAAAAAGATTCAACGTTGGATCATGGCTTCCAACTATGTTCTTAGAGCACAACTTCCGGAAGAAAGGAAGCTTTGCAACCTTGTATTCTCCAGTTATTCTCTTCATGCTGACATTGCTTTCATGAAGATAAGCAGGGGATCCATGACTCAGTTACTGAATTTCGCCAATGCTGTGGCTACTGGGACCGGTTCCCCAGAGCGTTTGTTCAGGATCCTTAAAGTGTTTGAGGCATTGAGAGAACTATTACCTGAGATGGAGTCATTGTTTTCTGATCAGTATAGTGTGACTCTCAGAGATGAGGCAATTGCAATCTGTGAAAAGTTGAGGGAAGCAATCAAAAGCGTTTTTAAGGACTTGGAGAATATGTTATGCCAGGACCCTCCTACAAGGGTGACTGTTCCTGGTGGAGGGCTTCATCCAATTACACACTATATAATGAACTATCTCCGTGCTGCTTGTCAATCTCTGAGGACATTGGAGTATGTCTTTGAAAATGAAAACCTTGAAATGTCATTATCTTCTCCACTTTCTTTTCAGGTGGTTCGGATTATGGAATTGTTGGAGAGGTATTTGGAGGCCAACTCAAAAATGTACCAAGGACCATGCTTGCACTTTGTTTTCATGATGAACAACGTGAGGTACATTGTTCAGACTGCAAAACATAGTGAACTAAGACAACTGTTGGGTGAACTCTGGATCCAGAAACACATAGCACAAGTCAGACAATACCTTGTAAACTACGAGAGAAGCTCATGGGATCAGGTACTTGGTATGTTTAAGGTAGATAATGATCATGTATTTGTGGAGTCCTTCAAACAGAAGCTTAGCCTGTTAATCTTGCAATTTGAAGGGATATGTAAAGTGCAGTCTACATGGGTTATCTTTGATGAAAGGCTAAGAGAAAAGATTATAAGTTCGTTGAAAAAAATCCTGTTGCCAGCATATGAAAATTTCTCTGCAAGGTTCCAAAATGTTATGGAGACACAAGAAGATACCAATATATATAGTGACCTTGGGTTTGGGATCCAAGATATTGTGACCGGAATAGACAAGTTGTTTCAAGGAAGAGATGAGCTCAAAAAGCACAGAAATATGCAACCAACATGGACCATAGTCTTGCCCATTAACAAGGATTTCTATGAATGGAGGAAGCGGGGTCAAGATGCATTCCTCAATTCTTCATATCCAAGGGATTACTACTGGTGTATTCACAAGTTTGATCAAGGTTGCCAGGCAACCAAACAGGTCCAGCAAATACAAGAAAATCCTACAAAGTTCATGACTAGGTATACTGGCTTACATACATGCAGAATGGGAGCTAACGCTCCAGGAATGCTTACAGAAGCTAATACTCACGAAACATTTATTGTTAACCATCCTGATCAGTAG 1887 0.4012 MSLSLSRQIDLGFEVDLFNFFLGCLMVQLMSIHWELAIVGAVFCYLLMYLNSHLDSQTQSETFNLAEHVTVEIDDANSVQVGAGSQCNQELIYTILGIEEKREDTVIFPTDMEARLREAIVAGFVDECYHIYFTWRRQILDPKLLKIGLHKLDIKEIKNVPLNYLEKKIQRWIMASNYVLRAQLPEERKLCNLVFSSYSLHADIAFMKISRGSMTQLLNFANAVATGTGSPERLFRILKVFEALRELLPEMESLFSDQYSVTLRDEAIAICEKLREAIKSVFKDLENMLCQDPPTRVTVPGGGLHPITHYIMNYLRAACQSLRTLEYVFENENLEMSLSSPLSFQVVRIMELLERYLEANSKMYQGPCLHFVFMMNNVRYIVQTAKHSELRQLLGELWIQKHIAQVRQYLVNYERSSWDQVLGMFKVDNDHVFVESFKQKLSLLILQFEGICKVQSTWVIFDERLREKIISSLKKILLPAYENFSARFQNVMETQEDTNIYSDLGFGIQDIVTGIDKLFQGRDELKKHRNMQPTWTIVLPINKDFYEWRKRGQDAFLNSSYPRDYYWCIHKFDQGCQATKQVQQIQENPTKFMTRYTGLHTCRMGANAPGMLTEANTHETFIVNHPDQ 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2003g00022 628 ProSiteProfiles WRKY domain profile. 537 600 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi2003g00022 628 Pfam WRKY DNA -binding domain 543 603 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi2003g00022 628 Gene3D WRKY domain 535 605 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi2003g00022 628 SUPERFAMILY Cullin repeat-like 122 495 IPR016159 -
Gabi2003g00022 628 SMART WRKY_cls 542 604 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi2003g00022 628 Pfam Exo70 exocyst complex subunit 170 496 IPR046364 GO:0000145|GO:0005546|GO:0006887
Gabi2003g00022 628 SUPERFAMILY WRKY DNA-binding domain 539 604 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi2003g00022 628 Gene3D Exocyst complex component Exo70 47 529 - -
Gabi2003g00022 628 PANTHER EXOCYST COMPLEX PROTEIN EXO70 110 502 IPR004140 GO:0000145|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2003g00022 Gabi-Chr2003 245075 247416 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2003g00022 110 521 EXO70 exocyst subunit family AT5G58430 47.962 1.54e-132 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi2003g00022 Exo70 3.3e-80 CL0295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2003g00022 K07195 - aprc:113848528 553.903