Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2003g00002 ATGTCTTCATCAATCTTATTTGCTCTTCTTTTGATTTTGCCTTGTCAATATTCATCTTCATTCTCCCTCTCTGTGGAGAAACTCCAAGAAGACGTTATAGTTTCACCCAATGGCACATTCACCGCAGGCTTTTATGCTGTTGGAGAAAACGCTTATTGCTTCTCCATATGGTTCACCCAACCTGTAGATAAACATGGCCACAATGCTACCATAGTTTGGATGGCAAACCGTAACCAACCAGTGAATGGAAAACGCTCAAAACTTTCCCTTCTTGACAATGGTAACCTCATCTTAACAGATGCAGGACAGTTCACAGTTTGGACCACAAACACCAACTCATCCAACCCACTTGAGTTGCTTTTGCACGACACTGGAAACCTTGTTCTTCAAGAACAGAACAACGGTTTCATTCTGTGGCAAAGTTTCCATCACCCAACAGATACACTCCTTCCTGATCAACATCTCACAAGGTACATGAAGCTTGTTTCCTCAAGAAGCAAGAGCGACTATTCTTCCGGCTTCTACAAGCTATTCTTTGACAACGACAATGTTCTTCGTCTTCTTTATGATGGTCCTCAAGTTTCTAGTATTTATTGGCCAGATCCTTGGCTTGTAATTTGGGAAGCTAGTAGATCCACTTACAACGGCAGCAGAGTTGCAGCACTTGATCGTTTGGGGAAGTTCCATTCGTCTGATGATTTCACTCTTAGGACATCTGACTATGGGACAGTGATCCCACGAAGACTAACGCTTGATCATGATGGTAATCTTCGTCTATATAGCTGGAAACATGGACAAGATAAGTGGTCAATATCAGGGCAAGCCAAGCAACAACCTTGCAAGATTCATGGAATTTGTGGACCCAATAGTATTTGCAGTGTTGATCCAAGTGCTGGTAGTAGGTGTAGGTGTCTTCCAGGCTATAGCAGGGTCAACAATCAAGATTGGTCTCAAGGGTGTAAACCAAACTTCCAACTACCCTGCAACAACACCACCGAGTCTCGCTTCTTATTCCTACCCCATGTGGCGTTTTATGGATATGACTATGTATACCATGCAAATTACACCTTTGAACAATGTACGCATTTGTGTTTGCGATTGTGTAAATGCGTAGGCTTCCAGTACTACCCTTTTGAGCCCGCTAGTGTCTTTAGATGTTACATAAAGTCACAGTTACGAAATGGGTATCAAACATTAGATTTCACCGGATCAAGCTTCTTGCGATTGCCGAAAAGCAGTACTTTTTCCAATGAGAACCCCATCAAAGATAATGGCTTGGTATGTTCAGGAAATAGAACTCAACTTGAAAGACCATACACGAAAGGTAAAGAAAATGGATCAGTGAAGTTCATGCTTTGGTTTGCGAGTGGCTTGGGAGGAATTGAGGTAGTGTGCATATTTCTGGTTTGGTGTTTCTTAATTAGAAATGGGAAACACTTGGGTTCAGACACACAGGGCTATGTTCTTGCAGCAGCAACAGGATTCAGGAGATTCAGTTACTCTGAACTGAAACAAGCCACAAAAGGTTTCAGTAAAGGGATTGGAAGGGGAGCTGGTGGAATTGTCTATAAGGGTCTGTTATCAGATAATAGAGTTGTGGCAATAAAGCAACTATATGAGGCAAACCAAGGAGAAAGTGAGTTCTTAGCTGAAGTAAGCATCATTGGAAGGCTTAACCACATGAACTTAATTAGCATGTGGGGTTATTGTGCAGAGGGAAAGCACAGGTTGCTGGTGTATGAGTACATGAAAAATGGTTCTTTAGCGGAAAACTTCTCGTCAAATGCACTTGATTGGGGTCAGAGGTATAGCATTGCTTTGGGTACGGCAAGGGGTCTGGCTTACCTACATGAAGAATGTTTGGAGTGGATTTTGCATTGTGATATCAAGCCGCAAAATATACTTCTTGATTCTGATTTTAAACCCAAGGTTGCGGATTTTGGCCTGTCTAAGCTTGTAAATCGGAACAATCCCAACACTTCAAGCGTCTCAAGGATAAGAGGAACAAGAGGTTACATGGCTCCAGAATGGGTTTTCAACATGTCAATCACTTCCAAGGTGGATGTTTATAGCTATGGAATTGTTGTCTTGGAGATGATAACTGGAAAGAGCCCAATGACAGGCATCCAAAAAGCAGATGGAGTAGACTCACCAAACGAGAGGTTGGTAACATGGGTGAGGGAAAAGAGGAAAGGATCTGAAGTGGAATCTTGGGTGGAAGAAATCATTGACACTGCATTGGTATCAAATTATGACAGAAATAAAATGGAAATTTTGGCTACAGTGGCTTTGGAATGTGTGGAGGAAGACAGAGACTTGAGACCCAGCATGAGACAAATTGTTGAGAGGCTCCAGAGCTATGAACATGATTCTTGA 2376 0.4226 MSSSILFALLLILPCQYSSSFSLSVEKLQEDVIVSPNGTFTAGFYAVGENAYCFSIWFTQPVDKHGHNATIVWMANRNQPVNGKRSKLSLLDNGNLILTDAGQFTVWTTNTNSSNPLELLLHDTGNLVLQEQNNGFILWQSFHHPTDTLLPDQHLTRYMKLVSSRSKSDYSSGFYKLFFDNDNVLRLLYDGPQVSSIYWPDPWLVIWEASRSTYNGSRVAALDRLGKFHSSDDFTLRTSDYGTVIPRRLTLDHDGNLRLYSWKHGQDKWSISGQAKQQPCKIHGICGPNSICSVDPSAGSRCRCLPGYSRVNNQDWSQGCKPNFQLPCNNTTESRFLFLPHVAFYGYDYVYHANYTFEQCTHLCLRLCKCVGFQYYPFEPASVFRCYIKSQLRNGYQTLDFTGSSFLRLPKSSTFSNENPIKDNGLVCSGNRTQLERPYTKGKENGSVKFMLWFASGLGGIEVVCIFLVWCFLIRNGKHLGSDTQGYVLAAATGFRRFSYSELKQATKGFSKGIGRGAGGIVYKGLLSDNRVVAIKQLYEANQGESEFLAEVSIIGRLNHMNLISMWGYCAEGKHRLLVYEYMKNGSLAENFSSNALDWGQRYSIALGTARGLAYLHEECLEWILHCDIKPQNILLDSDFKPKVADFGLSKLVNRNNPNTSSVSRIRGTRGYMAPEWVFNMSITSKVDVYSYGIVVLEMITGKSPMTGIQKADGVDSPNERLVTWVREKRKGSEVESWVEEIIDTALVSNYDRNKMEILATVALECVEEDRDLRPSMRQIVERLQSYEHDS 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2003g00002 791 FunFam Putative receptor protein kinase ZmPK1 15 144 - -
Gabi2003g00002 791 SUPERFAMILY Protein kinase-like (PK-like) 491 785 IPR011009 -
Gabi2003g00002 791 CDD STKc_IRAK 514 785 - -
Gabi2003g00002 791 FunFam S-receptor-like serine/threonine-protein kinase 478 582 - -
Gabi2003g00002 791 FunFam Serine/threonine-protein kinase 583 791 - -
Gabi2003g00002 791 Gene3D Transferase(Phosphotransferase) domain 1 583 791 - -
Gabi2003g00002 791 SMART serkin_6 508 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2003g00002 791 CDD PAN_AP_plant 324 410 - -
Gabi2003g00002 791 ProSiteProfiles Bulb-type lectin domain profile. 18 142 IPR001480 -
Gabi2003g00002 791 ProSiteProfiles PAN/Apple domain profile. 328 413 IPR003609 -
Gabi2003g00002 791 CDD EGF 279 313 - -
Gabi2003g00002 791 SMART blect_4 24 145 IPR001480 -
Gabi2003g00002 791 ProSiteProfiles Protein kinase domain profile. 508 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2003g00002 791 CDD B_lectin 33 145 IPR001480 -
Gabi2003g00002 791 Gene3D Phosphorylase Kinase; domain 1 477 582 - -
Gabi2003g00002 791 Gene3D - 146 273 IPR036426 -
Gabi2003g00002 791 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 163 IPR036426 -
Gabi2003g00002 791 PIRSF SRK 1 790 IPR024171 GO:0004674
Gabi2003g00002 791 ProSitePatterns Protein kinases ATP-binding region signature. 514 536 IPR017441 GO:0005524
Gabi2003g00002 791 Pfam S-locus glycoprotein domain 245 310 IPR000858 GO:0048544
Gabi2003g00002 791 Pfam Protein kinase domain 512 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2003g00002 791 PANTHER OS07G0415500 PROTEIN 4 788 - -
Gabi2003g00002 791 FunFam Serine/threonine-protein kinase 146 273 - -
Gabi2003g00002 791 Pfam D-mannose binding lectin 70 158 IPR001480 -
Gabi2003g00002 791 ProSiteProfiles EGF-like domain profile. 276 314 IPR000742 -
Gabi2003g00002 791 Gene3D - 23 144 IPR036426 -
Gabi2003g00002 791 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2003g00002 Gabi-Chr2003 20601 22976 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2003g00002 498 788 Trihelix Transcription Factor Family AT5G38560 42.761 2.05e-67 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gabi2003g00002 Pkinase 6e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2003g00002 - - gmx:100806357 1053.12