Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2001g00036 ATGAAGCCTTTTTCTCTCGTTATACATGAATTTTACTCTACATGCCTTCCCCTATTTCTTCTCTTAATTACTTTGAACTCACTTTGGTTTAGCCCAAGCACAACTGCCTCTCAATCAGGAAACCAGACTGACCATTTGGCATTGCTTGAATTCAAGCAATCAATATCCAATGACCCATATGGTATCTTGATCTCTTGGAATAGTTCTATCCACTTTTGCAACTGGCTCGGAATCACATGTAGCCCCATGCACCAAAGAGTTACTGAGTTGAACCTACAAGGTTATCAATTGCATGGGCTCATATCTCCGCAAGTTGGCAATCTCTCTTTTCTTATAAACCTCAACCTCGCAAACAATAGCTTTCACGGAAAAATCCCGCAGGAATTGGATCGATTGTTCCAATTGCAGCAACTCTCTCTCAGCAACAACTCGTTGACCGGGGGAATTCCTACAAACTTGACTAGCTGCTCTAATCTCAAAGAGATACATTTATCTGGGAACAATCTGATTGGCAAAATACCAATTGAAATTACCTCTCTTCAAAAACTTCAAATTTTTGCTGTTGCAAAAAATAATTTAACTGGAGGAGTCCCACCCTTCATAGGGAATCTTTCATCCCTTACTGTTTTCTCGATGGTTGAAAATAACTTGGAGGGAGATATTCCGCAAGAAATATGCCGCCTCAAAAACTTGACACGTATATTAGTGGCTTCCAACAAAATGTCGGGTACATTTCCTTCTTGTCTTTACAATATGTCATCTCTTGCTTCAATCTCAGCTCCAGAGAATCAATTTAATGGGTCTCTTCCAGCCAACATGTTCCTCACCCTTCGCAATCTCCTAGTACTTGAAATTGGCGGGAATCAAATCTCAGGTCCAATCCCCACTTCCATTGCAAATGGTTCTGTCCTTCAAATATTTGATATAACTGAAAACCATTTTGTAGGACAAGTTCCAAGTCTAGGGAAGCTGCAAGATCTTCTAAAACTAAGTTTTGCTGCAAACAATCTAGGTGACAATTTAACTACAGATTTGGAGTTTTTAAAATCATTGACAAACTCTAGTAAGCTGCAACTCTTAGGTATGGCCGGAAATAAGTTTGGAGGTCGTTTACCAAATTGCATAGGCAATTTATCCTCCCAACTCAGTCAAATATATCTTGGGGGTAATCAAATATCAGGACAAATTCCTGCAGAATTAGGAAATCTAATTAGCTTAACTCTCTTGTCCATGGAAAATAACCGTTTTGAGGGTAGTATTCCATCTGCTTTAGGAAAAAATCACAAGATGCAAATTTTAGAATTGGGTGGAAACAAGCTCTCAGGAGGTATCCCATCCATCATAGGAAACCTTAGTTTGTTGTTTTATTTGAGTTTAGACCAAAATTTGTTTGAAGGAAATATTCCTCTAAGTATACAAAACTGCCAAAAGTTACAATATCTAAACCTTTCCCGAAACAATCTTAGAGGAACCATTCCCTCAGAGGTTTTTAGTCTTTCCTCTTTAACAAATTTACTAGACTTGTCACACAACTCATTAAGTGGTAGTCTACCAAATGAAGTTGGCCAATTGCAAAATATTGATATCCTGGATGTCTCTGAGAATCAACTATATGCTAATATTCCTGGAACCATTGGAGAATGCTCAAGCTTGGAGTACCTTTATTTGCAGGGGAATTCCTTCCATGGAATCATCCCATCCTCTTTGGCTTCACTAAAAGGTCTTCGACATTTAGACCTGTCACGAAATCACTTGTCAGGATCAATTCCTAATGTTTTGCAAAATATTTCGTTCTTGGAATATTTAAATCTATCATTCAACATGTTGGATGGTGAGGTACCAACAAAAGGTGTCTTTCGAAATGCAAGTGAGTTAACAGTGACCGGAAACAAGCTTTGTGGAGGTGTTTCAGAGCTGCATCTACCGCCATGCCCTGTCAAAAGTAATAAACATGCAAAACACCACAATTTCAGGTTGACAGCAGCAATAGTTAGTGTAATTGTTTTTCTTCTCATACTGTCATTCATTTTCACTGTCTATTGGATGAGGAAAAGAAGCAAGAAACCATCTTCTGATTCACCAACAATTGACCAGCTGGCCAAGGTTTCATATCAAAACCTACACCGTGGAACAGATGGGTTTTCAATAAGAAACTTGATAGGATCCGGAAGTTTTGGCTCTGCGTACAAAGGAACTATTGAGCCAGAAGACTCAGTTGTTGCCATAAAGGTAATAAATCTTCAAAAGAAGGGAGCTCACAAGAGTTTCATTGCTGAGTGCAATGCACTTAAAAATATCAGGCATCGAAATCTGGTTAAGATTTTAACATGTTGCTCCAGTACAGATTTCAAAGGTCAAGAATTTAAAGCTCTTGTTTTTGAGTACATGAAAAATGGAAGCTTAGAAAGTTGGTTGCATCCAGCAGCAGATATTGCAGATCAGCCTAGATCATTGAACCTTGAGGAAAGGTTAAATATTATTAATGATGTTGCTTCAGCAGTTCATTATCTTCACTATGAATGTGAGCAAGCTATCATTCACTGTGATTTGAAGCCTGGCAACGTTCTTCTTGATGATTGCATGGTAGCTCACGTGAGTGATTTTGGCCTAGCAAGATTGCTCTCAAGTCTTGGAGTCTCTCTCACACAAAGTAGCACAGTTGGAATAAAGGGGACCGTTGGTTATGCTCCTCCAGAGTATGGAATGGGTTTTGCTGTGTCAATTGAAGGTGATATGTATAGTTTCGGAATTTTGGTATTAGAAATATTAACCGGAAGAAGACCCACAGATGAAATGTTTCAAGATGGTCATAATCTCCACAATTATGTTGAAATTTCAATTTCAACTCACCTTTTGCAGATTGTGGACCCAACTATTCTCCCCTACGAATTGGAACAGGGTACCAGCAATAAGAAACTTGGCCTTATGCATCCTAGTGTAGAGAGATGTTTATTTTCTCTTTCTAGGATTGCCCTTGCTTGTTCAATGGAATCACCAAAAGTAAGAATGAATATGATTGATGTCATTAGGGAGCTTAATCTAATCAAAAGTTTCTTTCCTTCTAGGATTTAG 3072 0.3851 MKPFSLVIHEFYSTCLPLFLLLITLNSLWFSPSTTASQSGNQTDHLALLEFKQSISNDPYGILISWNSSIHFCNWLGITCSPMHQRVTELNLQGYQLHGLISPQVGNLSFLINLNLANNSFHGKIPQELDRLFQLQQLSLSNNSLTGGIPTNLTSCSNLKEIHLSGNNLIGKIPIEITSLQKLQIFAVAKNNLTGGVPPFIGNLSSLTVFSMVENNLEGDIPQEICRLKNLTRILVASNKMSGTFPSCLYNMSSLASISAPENQFNGSLPANMFLTLRNLLVLEIGGNQISGPIPTSIANGSVLQIFDITENHFVGQVPSLGKLQDLLKLSFAANNLGDNLTTDLEFLKSLTNSSKLQLLGMAGNKFGGRLPNCIGNLSSQLSQIYLGGNQISGQIPAELGNLISLTLLSMENNRFEGSIPSALGKNHKMQILELGGNKLSGGIPSIIGNLSLLFYLSLDQNLFEGNIPLSIQNCQKLQYLNLSRNNLRGTIPSEVFSLSSLTNLLDLSHNSLSGSLPNEVGQLQNIDILDVSENQLYANIPGTIGECSSLEYLYLQGNSFHGIIPSSLASLKGLRHLDLSRNHLSGSIPNVLQNISFLEYLNLSFNMLDGEVPTKGVFRNASELTVTGNKLCGGVSELHLPPCPVKSNKHAKHHNFRLTAAIVSVIVFLLILSFIFTVYWMRKRSKKPSSDSPTIDQLAKVSYQNLHRGTDGFSIRNLIGSGSFGSAYKGTIEPEDSVVAIKVINLQKKGAHKSFIAECNALKNIRHRNLVKILTCCSSTDFKGQEFKALVFEYMKNGSLESWLHPAADIADQPRSLNLEERLNIINDVASAVHYLHYECEQAIIHCDLKPGNVLLDDCMVAHVSDFGLARLLSSLGVSLTQSSTVGIKGTVGYAPPEYGMGFAVSIEGDMYSFGILVLEILTGRRPTDEMFQDGHNLHNYVEISISTHLLQIVDPTILPYELEQGTSNKKLGLMHPSVERCLFSLSRIALACSMESPKVRMNMIDVIRELNLIKSFFPSRI 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2001g00036 1023 SMART LRR_typ_2 572 595 IPR003591 -
Gabi2001g00036 1023 SMART LRR_typ_2 596 621 IPR003591 -
Gabi2001g00036 1023 SMART LRR_typ_2 132 156 IPR003591 -
Gabi2001g00036 1023 SMART LRR_typ_2 475 499 IPR003591 -
Gabi2001g00036 1023 SMART LRR_typ_2 277 305 IPR003591 -
Gabi2001g00036 1023 SMART LRR_typ_2 524 548 IPR003591 -
Gabi2001g00036 1023 SMART LRR_typ_2 403 427 IPR003591 -
Gabi2001g00036 1023 SMART LRR_typ_2 204 228 IPR003591 -
Gabi2001g00036 1023 FunFam LRR receptor-like serine/threonine-protein kinase EFR 343 650 - -
Gabi2001g00036 1023 Gene3D Ribonuclease Inhibitor 41 199 IPR032675 -
Gabi2001g00036 1023 Pfam Leucine rich repeat N-terminal domain 42 81 IPR013210 -
Gabi2001g00036 1023 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 796 1022 - -
Gabi2001g00036 1023 Gene3D Phosphorylase Kinase; domain 1 695 795 - -
Gabi2001g00036 1023 FunFam LRR receptor-like serine/threonine-protein kinase EFR 685 795 - -
Gabi2001g00036 1023 Gene3D Transferase(Phosphotransferase) domain 1 796 1019 - -
Gabi2001g00036 1023 FunFam Piriformospora indica-insensitive protein 2 173 271 - -
Gabi2001g00036 1023 ProSiteProfiles Protein kinase domain profile. 714 1019 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2001g00036 1023 SUPERFAMILY Protein kinase-like (PK-like) 687 1013 IPR011009 -
Gabi2001g00036 1023 Pfam Protein kinase domain 716 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2001g00036 1023 SUPERFAMILY L domain-like 381 638 - -
Gabi2001g00036 1023 ProSitePatterns Serine/Threonine protein kinases active-site signature. 845 857 IPR008271 GO:0004672|GO:0006468
Gabi2001g00036 1023 Pfam Leucine rich repeat 550 609 IPR001611 GO:0005515
Gabi2001g00036 1023 SUPERFAMILY L domain-like 42 337 - -
Gabi2001g00036 1023 PANTHER OS04G0122200 PROTEIN 227 1010 - -
Gabi2001g00036 1023 ProSitePatterns Protein kinases ATP-binding region signature. 720 743 IPR017441 GO:0005524
Gabi2001g00036 1023 SMART serkin_6 714 1019 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2001g00036 1023 Gene3D Ribonuclease Inhibitor 210 350 IPR032675 -
Gabi2001g00036 1023 Gene3D Ribonuclease Inhibitor 351 645 IPR032675 -
Gabi2001g00036 1023 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 43 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2001g00036 Gabi-Chr2001 269616 272897 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2001g00036 41 1019 Receptor kinase-like Gene Family AT3G47570 45.363 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gabi2001g00036 Pkinase 3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2001g00036 - - gmx:100792724 1389.4