Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2001g00032 ATGGAGAACATAAACGACGATGGTTCCGCACAAGATCTCGATCCTCAAAGCGACCATAGCTCCGATTATTTAGCTCACTCACAACCTCAGCCTCAGCCTCGTCGACCGCGCGGCTTCGCGGCGGCTGCAGCTGCCACGGGGACCAATTCCGCCGGAAAAGGGAAGAAGGAGAGGGAAAAGGAGAAGGAGCGCACGAAGCTCAGGGAGCGACACCGTCGAGCAATCACGAGCCGCATGCTGGCTGGGCTCCGTCAGTATGGGAATTTCCCTCTGCCGGCGCGTGCCGACATGAATGATGTACTCGCCGCTCTCGCGCGTGAGGCTGGTTGGGTTGTTGACACCGATGGCACCACCTACCGCCAGTGTCCCCCTCCTTCTCACATGGGATCATTTGCATCAAGGTCAGTTGAAAGTCAACTCTCTGCTGGTTCTTTGAGAACTTGCTCTGTTAAGGAAACGCTAGAGAATCAGCCACCAGTCCTTAGAATTGATGAATGTTTGTCGCCTGCTTCCATTGATTCTGTTGTAATTGCAGAAAGGGACTCAAAGAATGAGAAATATGCAAGTGCAAGCCCAATCAATTCAGCTGACTGCTTGGAGGCTGATCAGCTTATGCAAGATATTCATTCTGGGGTGCATGAAAATGACTTTACTGGCACGCCATATGTTCCTGTTTACATAAAGCTTCCAGCCGGTATTATTAACAAGTTTTGCCAGTTGATTGATTCTGAAGGCATTAGGCAGGAGCTAATCCATTTGAAGTCTTTAAATATAGATGGTGTTGTTGTGGATTGTTGGTGGGGCATTGTTGAAGGCTGGAGCCCACAGAAATATGTCTGGTCTGGTTATAGGGAGCTTTTTAACATTATTAAAGAATTCAAGCTGAATTTACAGGTTGTTATGGCATTTCATGAATGTGGAGGGAATGATTCTAGTGATGCATTGATTGCCCTCCCACAATGGGTTTTGGATATTGGAAAAGACAACCAGGATATATTCTTCACAGATCGTGAAGGACAGAGGAATACTGAATGCCTTTCTTGGGGAATTGATAAAGAGAGAGTTCTCAAAGGCAGAACTGGAATTGAGGTCTATTTTGATATGATGAGAAGCTTTCGGACAGAATTTGTTGACCTGTTTGCAGAAGGTCTGATTTCTGCCATAGAAATTGGACTTGGAGCATCTGGGGAGCTGAAATACCCTTCTTTCTCAGAAAGGATGGGATGGAGGTATCCTGGTATCGGTGAGTTTCAGTGCTATGATAAGTACCTGCAACACAGTCTACGCAGAGCAGCCAAATTACGTGGTCACTCTTTCTGGGCTAGAGGACCAGATAATGCTGGACACTACAACTCTATGCCACATGAAACTGGATTCTTTTGTGAACGAGGTGATTATGACAACTATTATGGACGCTTCTTCTTACATTGGTACTCTCAGACATTAATAGACCATGCGGATAATGTGCTGTCTCTTGCAAGCCTTGCTTTTGAGGAAACAAAAATAATTGTCAAGGTTCCTGCTGTATACTGGTGGTATAAGACTCCTAGTCATGCAGCAGAGTTGACAGCAGGATATCACAACCCCACAAATCAGGATGGATATTCCCCCGTGTTTGAGGTTCTGAGAAAACATGCAGTCACCATGAAATTTGTCTGCTTAGGATTTCATATTTCCAGCCAGGAAGTTAATGAATCATTGGTTGATCCGGAGGGATTGAGTTGGCAGGTATTGAACTCAGCTTGGGATCGGGGGTTGATAGCTGCTGGAGAGAATGCACACCTTTGCTACGATAGAGAAGGGTACAAGAGATTGGTTGAGATGGCAAAGCCCAGAAACGATCCTGATCACCGTCACTTCTCCTTCTTTGTTTATCAGCAACCATCTTTGCTTCAGGGAAGTGTTTGCTTGTCAGAATTGGATTTCTTCATCAAATGCATGCATGGTGAGATGACAGGAGATATGTAA 1968 0.4573 MENINDDGSAQDLDPQSDHSSDYLAHSQPQPQPRRPRGFAAAAAATGTNSAGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVDTDGTTYRQCPPPSHMGSFASRSVESQLSAGSLRTCSVKETLENQPPVLRIDECLSPASIDSVVIAERDSKNEKYASASPINSADCLEADQLMQDIHSGVHENDFTGTPYVPVYIKLPAGIINKFCQLIDSEGIRQELIHLKSLNIDGVVVDCWWGIVEGWSPQKYVWSGYRELFNIIKEFKLNLQVVMAFHECGGNDSSDALIALPQWVLDIGKDNQDIFFTDREGQRNTECLSWGIDKERVLKGRTGIEVYFDMMRSFRTEFVDLFAEGLISAIEIGLGASGELKYPSFSERMGWRYPGIGEFQCYDKYLQHSLRRAAKLRGHSFWARGPDNAGHYNSMPHETGFFCERGDYDNYYGRFFLHWYSQTLIDHADNVLSLASLAFEETKIIVKVPAVYWWYKTPSHAAELTAGYHNPTNQDGYSPVFEVLRKHAVTMKFVCLGFHISSQEVNESLVDPEGLSWQVLNSAWDRGLIAAGENAHLCYDREGYKRLVEMAKPRNDPDHRHFSFFVYQQPSLLQGSVCLSELDFFIKCMHGEMTGDM 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2001g00032 655 Gene3D Glycosidases 213 654 - -
Gabi2001g00032 655 MobiDBLite consensus disorder prediction 1 69 - -
Gabi2001g00032 655 Pfam BES1/BZR1 plant transcription factor, N-terminal 52 196 IPR008540 -
Gabi2001g00032 655 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 160 650 IPR001554 GO:0000272|GO:0016161
Gabi2001g00032 655 MobiDBLite consensus disorder prediction 52 69 - -
Gabi2001g00032 655 Pfam Glycosyl hydrolase family 14 239 622 IPR001554 GO:0000272|GO:0016161
Gabi2001g00032 655 SUPERFAMILY (Trans)glycosidases 217 651 IPR017853 -
Gabi2001g00032 655 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 257 271 IPR001554 GO:0000272|GO:0016161
Gabi2001g00032 655 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 278 296 IPR001554 GO:0000272|GO:0016161
Gabi2001g00032 655 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 466 485 IPR001554 GO:0000272|GO:0016161
Gabi2001g00032 655 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 393 415 IPR001554 GO:0000272|GO:0016161
Gabi2001g00032 655 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 500 516 IPR001554 GO:0000272|GO:0016161
Gabi2001g00032 655 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 517 528 IPR001554 GO:0000272|GO:0016161
Gabi2001g00032 655 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 300 321 IPR001554 GO:0000272|GO:0016161
Gabi2001g00032 655 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 535 558 IPR001554 GO:0000272|GO:0016161
Gabi2001g00032 655 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 573 595 IPR001554 GO:0000272|GO:0016161
Gabi2001g00032 655 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2001g00032 Gabi-Chr2001 196506 203025 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2001g00032 12 651 Glycoside Hydrolase AT5G45300 65.719 0.0 875
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Gabi2001g00032 Glyco_hydro_14 9.8e-86 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2001g00032 K01177 - gmx:100777004 1203.73