Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2001g00031 ATGGAGAACATAAACGACGATGGTTCCGCACAAGATCTCGATCCTCAAAGCGACCATAGCTCCGATTATTTAGCTCACTCACAACCTCAGCCTCAGCCTCGTCGACCGCGCGGCTTCGCGGCGGCTGCAGCTGCCACGGGGACCAATTCCGCCGGAAAAGGGAAGAAGGAGAGGGAAAAGGAGAAGGAGCGCACGAAGCTCAGGGAGCGACACCGTCGAGCAATCACGAGCCGCATGCTGGCTGGGCTCCGTCAGTATGGGAATTTCCCTCTGCCGGCGCGTGCCGACATGAATGATGTACTCGCCGCTCTCGCGCGTGAGGCTGGTTGGGTTGTTGACACCGATGGCACCACCTACCGCCAGTGTCCCCCTCCTTCTCACATGGGATCATTTGCATCAAGGTCAGTTGAAAGTCAACTCTCTGCTGGTTCTTTGAGAACTTGCTCTGTTAAGGAAACGCTAGAGAATCAGCCACCAGTCCTTAGAATTGATGAATGTTTGTCGCCTGCTTCCATTGATTCTGTTGTAATTGCAGAAAGGGACTCAAAGAATGAGAAATATGCAAGTGCAAGCCCAATCAATTCAGCTGACTGCTTGGAGGCTGATCAGCTTATGCAAGATATTCATTCTGGGGTGCATGAAAATGACTTTACTGGCACGCCATATGTTCCTGTTTACATAAAGCTTCCAGCCGGTATTATTAACAAGTTTTGCCAGTTGATTGATTCTGAAGGCATTAGGCAGGAGCTAATCCATTTGAAGTCTTTAAATATAGATGGTGTTGTTGTGGATTGTTGGTGGGGCATTGTTGAAGGCTGGAGCCCACAGAAATATGTCTGGTCTGGTTATAGGGAGCTTTTTAACATTATTAAAGAATTCAAGCTGAATTTACAGGTTGTTATGGCATTTCATGAATGTGGAGGGAATGATTCTAGTGATGCATTGATTGCCCTCCCACAATGGGTTTTGGATATTGGAAAAGACAACCAGGATATATTCTTCACAGATCGTGAAGGACAGAGGAATACTGAATGCCTTTCTTGGGGAATTGATAAAGAGAGAGTTCTCAAAGGCAGAACTGGAATTGAGGTCTATTTTGATATGATGAGAAGCTTTCGGACAGAATTTGTTGACCTGTTTGCAGAAGGTCTGATTTCTGCCATAGAAATTGGACTTGGAGCATCTGGGGAGCTGAAATACCCTTCTTTCTCAGAAAGGATGGGATGGAGGTATCCTGGTATCGGTGAGTTTCAGTGCTATGATAAGTACCTGCAACACAGTCTACGCAGAGCAGCCAAATTACGTGGTCACTCTTTCTGGGCTAGAGGACCAGATAATGCTGGACACTACAACTCTATGCCACATGAAACTGGATTCTTTTGTGAACGAGGTGATTATGACAACTATTATGGACGCTTCTTCTTACATTGGTACTCTCAGACATTAATAGACCATGCGGATAATGTGCTGTCTCTTGCAAGCCTTGCTTTTGAGGAAACAAAAATAATTGTCAAGGTTCCTGCTGTATACTGGTGGTATAAGACTCCTAGTCATGCAGCAGAGTTGACAGCAGGATATCACAACCCCACAAATCAGGATGGATATTCCCCCGTGTTTGAGGTTCTGAGAAAACATGCAGTCACCATGAAATTTGTCTGCTTAGGATTTCATATTTCCAGCCAGGAAGTTAATGAATCATTGGTTGATCCGGAGGGATTGAGTTGGCAGGTATTGAACTCAGCTTGGGATCGGGGGTTGATAGCTGCTGGAGAGAATGCACACCTTTGCTACGATAGAGAAGGGTACAAGAGATTGGTTGAGATGGCAAAGCCCAGAAACGATCCTGATCACCGTCACTTCTCCTTCTTTGTTTATCAGCAACCATCTTTGCTTCAGGGAAGTGTTTGCTTGTCAGAATTGGATTTCTTCATCAAATGCATGCATGCTATGCTTGCAGGTGAGATGACAGGAGATATGTAA 1980 0.4576 MENINDDGSAQDLDPQSDHSSDYLAHSQPQPQPRRPRGFAAAAAATGTNSAGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVDTDGTTYRQCPPPSHMGSFASRSVESQLSAGSLRTCSVKETLENQPPVLRIDECLSPASIDSVVIAERDSKNEKYASASPINSADCLEADQLMQDIHSGVHENDFTGTPYVPVYIKLPAGIINKFCQLIDSEGIRQELIHLKSLNIDGVVVDCWWGIVEGWSPQKYVWSGYRELFNIIKEFKLNLQVVMAFHECGGNDSSDALIALPQWVLDIGKDNQDIFFTDREGQRNTECLSWGIDKERVLKGRTGIEVYFDMMRSFRTEFVDLFAEGLISAIEIGLGASGELKYPSFSERMGWRYPGIGEFQCYDKYLQHSLRRAAKLRGHSFWARGPDNAGHYNSMPHETGFFCERGDYDNYYGRFFLHWYSQTLIDHADNVLSLASLAFEETKIIVKVPAVYWWYKTPSHAAELTAGYHNPTNQDGYSPVFEVLRKHAVTMKFVCLGFHISSQEVNESLVDPEGLSWQVLNSAWDRGLIAAGENAHLCYDREGYKRLVEMAKPRNDPDHRHFSFFVYQQPSLLQGSVCLSELDFFIKCMHAMLAGEMTGDM 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2001g00031 659 MobiDBLite consensus disorder prediction 1 69 - -
Gabi2001g00031 659 SUPERFAMILY (Trans)glycosidases 217 649 IPR017853 -
Gabi2001g00031 659 Pfam BES1/BZR1 plant transcription factor, N-terminal 52 196 IPR008540 -
Gabi2001g00031 659 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 517 528 IPR001554 GO:0000272|GO:0016161
Gabi2001g00031 659 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 500 516 IPR001554 GO:0000272|GO:0016161
Gabi2001g00031 659 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 300 321 IPR001554 GO:0000272|GO:0016161
Gabi2001g00031 659 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 466 485 IPR001554 GO:0000272|GO:0016161
Gabi2001g00031 659 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 257 271 IPR001554 GO:0000272|GO:0016161
Gabi2001g00031 659 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 535 558 IPR001554 GO:0000272|GO:0016161
Gabi2001g00031 659 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 278 296 IPR001554 GO:0000272|GO:0016161
Gabi2001g00031 659 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 573 595 IPR001554 GO:0000272|GO:0016161
Gabi2001g00031 659 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 393 415 IPR001554 GO:0000272|GO:0016161
Gabi2001g00031 659 MobiDBLite consensus disorder prediction 52 69 - -
Gabi2001g00031 659 Gene3D Glycosidases 213 656 - -
Gabi2001g00031 659 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 160 649 IPR001554 GO:0000272|GO:0016161
Gabi2001g00031 659 Pfam Glycosyl hydrolase family 14 239 622 IPR001554 GO:0000272|GO:0016161
Gabi2001g00031 659 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2001g00031 Gabi-Chr2001 196506 203025 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2001g00031 12 649 Glycoside Hydrolase AT5G45300 65.766 0.0 872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Gabi2001g00031 Glyco_hydro_14 1e-85 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2001g00031 K01177 - gmx:100777004 1197.96