Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2001g00030 ATGCCTTCTAACATTGACCTTGATGACTGGGATCACACTGCATCCAGAACTGGTAGCAGCTCGGCCCATACTTCTTCAACTCAGTCCTTGAACCCTTCAAGTCGATTCCTTTCTCGCTTTAGCCTCATTCCTGGTAATATAAGCTTCAGACTTAGCAGAACCACCAGTTTGGGGTCATCTAGGCCTTGCCCTGCTTCTTCTGCAAGCCTCTCAATATTTAACAATGAAGATGAGCTCAATCTGCACTCAGGGCCTCCTGACAGCTTGATTAATAGAAATGAAACTCCACAACATAGTGACGTGATTAATGCATCTTTTGTTAGTCGAGTGCCTATACAGTATCATGAAGATGCTTCTAATAATTTAAGTTCTAATACCTCAGCATTGGGTTTTCATGGCAACTTGCAGAGCAGTCCCACACTTTCTCCTATCCAGGATGTGGATGGAAATGGAGATGGTTCAAGAGAAGTGCCGGATATGAGCTTTTTTCCTCGAAGAATTCATAATGAGACAGAAAATCTTGAGACTAGACATACTGATAGACGAAATGGAGCTCGAGAACCTGTTGAACCTAATGTTAGTTTTAGCAGAACTTTAAGTGTTGGAAGGCTTCGAGACAGAGTTCTCCGCCGATCAACAATATCCGACTTCACCTTTTGCCCTCTGCAACAGGAGAGAGAAGTGAGAGATGCTAATCAGGATAATGGAAGACAAGTATGGGAGAGAGATACAAGAGTGTTACCATCTGGTCGTAATGCTGTAAATTCTCCTTCTACATCTGGATCTCCTCTACCCAGTATGTCTAGCTCCATGTTTAGCAACCAAGACTATGAGCTTGAGACTTCAAGATCAAGAGAAACTAGGTATCAGGATCTACTGGAACATAGGTCGAATTTCCTTGAACGGAGAAGAAGAATACGATCCCAGGTTCGCGCTCTTCAGCGATTGGGAAGCCGGTTTGAAAATCTTTCTGGACATGACAGATCGTGTATCTTGTCCGGTCAACATAGAAATGGTCGTTGTACATGCCGAATCATTAGTCGTGATACCAATACAAATGATGATACCAATGCTAGAGCTAGCATATCAAGAATTGTTATGCTAGCTGAAGCCTTATTTGAGCAATCTGTGGTTTTATCTTCCCGCCCTTCTGTCTCTTCTATTGGATCTGTTCCTGCACCTATTGAAGTTGTGGAATCCTTGCCTGTGAAATTATACACAAAGTTGCACAAACATCAAGAAGAACCTGTACAATGCTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGCGAGTACTGCCTTGTCATCATGAATTTCATAGAACATGTGTAGACAAGTGGCTGAAGGAGATTCACAGGGTATGCCCACTATGTAGGGGGGACATCTGTATATCTGATTCACTGCCAACATAG 1419 0.4292 MPSNIDLDDWDHTASRTGSSSAHTSSTQSLNPSSRFLSRFSLIPGNISFRLSRTTSLGSSRPCPASSASLSIFNNEDELNLHSGPPDSLINRNETPQHSDVINASFVSRVPIQYHEDASNNLSSNTSALGFHGNLQSSPTLSPIQDVDGNGDGSREVPDMSFFPRRIHNETENLETRHTDRRNGAREPVEPNVSFSRTLSVGRLRDRVLRRSTISDFTFCPLQQEREVRDANQDNGRQVWERDTRVLPSGRNAVNSPSTSGSPLPSMSSSMFSNQDYELETSRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCTCRIISRDTNTNDDTNARASISRIVMLAEALFEQSVVLSSRPSVSSIGSVPAPIEVVESLPVKLYTKLHKHQEEPVQCYICLVEYEDGDSMRVLPCHHEFHRTCVDKWLKEIHRVCPLCRGDICISDSLPT 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2001g00030 472 ProSiteProfiles Zinc finger RING-type profile. 419 461 IPR001841 -
Gabi2001g00030 472 MobiDBLite consensus disorder prediction 1 32 - -
Gabi2001g00030 472 MobiDBLite consensus disorder prediction 130 147 - -
Gabi2001g00030 472 Pfam Ring finger domain 418 461 IPR001841 -
Gabi2001g00030 472 MobiDBLite consensus disorder prediction 249 270 - -
Gabi2001g00030 472 MobiDBLite consensus disorder prediction 130 191 - -
Gabi2001g00030 472 MobiDBLite consensus disorder prediction 159 187 - -
Gabi2001g00030 472 FunFam Putative RING zinc finger domain superfamily protein 388 466 - -
Gabi2001g00030 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 384 465 IPR013083 -
Gabi2001g00030 472 MobiDBLite consensus disorder prediction 14 32 - -
Gabi2001g00030 472 SUPERFAMILY RING/U-box 397 467 - -
Gabi2001g00030 472 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 471 - -
Gabi2001g00030 472 MobiDBLite consensus disorder prediction 248 270 - -
Gabi2001g00030 472 SMART ring_2 419 460 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2001g00030 Gabi-Chr2001 191491 194353 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2001g00030 138 468 C3H Transcription Factor Family AT5G45290 57.714 2.51e-107 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2001g00030 - - gmx:100815830 711.449