Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gabi2001g00029 | ATGGGGTCCAGTAGCAGCAAAGGCACTTCTTCATCTTGCAGTGGCAGTTTTCGAAAGGGTCGATCTAGGGGCCATAGAGGTTTCCCATCTTATTGTCTAGGAACAACGTCTGGATCTCGTGACACTGATAATGACGACGACGAGGTTTGTGATCAGAATAAAGTAAATGGAAGTGATGCTACGTACACCAGTGGCAATGAAATAGACTCAGATGAAGTGAAAACAGAATCTTTTAGAAAGTTGAAATCTGATAAATCGGATGAAATTCCTTGTATGCCTTCTAACATTGACCTTGATGACTGGGATCACACTGCATCCAGAACTGGTAGCAGCTCGGCCCATACTTCTTCAACTCAGTCCTTGAACCCTTCAAGTCGATTCCTTTCTCGCTTTAGCCTCATTCCTGGTAATATAAGCTTCAGACTTAGCAGAACCACCAGTTTGGGGTCATCTAGGCCTTGCCCTGCTTCTTCTGCAAGCCTCTCAATATTTAACAATGAAGATGAGCTCAATCTGCACTCAGGGCCTCCTGACAGCTTGATTAATAGAAATGAAACTCCACAACATAGTGACGTGATTAATGCATCTTTTGTTAGTCGAGTGCCTATACAGTATCATGAAGATGCTTCTAATAATTTAAGTTCTAATACCTCAGCATTGGGTTTTCATGGCAACTTGCAGAGCAGTCCCACACTTTCTCCTATCCAGGATGTGGATGGAAATGGAGATGGTTCAAGAGAAGTGCCGGATATGAGCTTTTTTCCTCGAAGAATTCATAATGAGACAGAAAATCTTGAGACTAGACATACTGATAGACGAAATGGAGCTCGAGAACCTGTTGAACCTAATGTTAGTTTTAGCAGAACTTTAAGTGTTGGAAGGCTTCGAGACAGAGTTCTCCGCCGATCAACAATATCCGACTTCACCTTTTGCCCTCTGCAACAGGAGAGAGAAGTGAGAGATGCTAATCAGGATAATGGAAGACAAGTATGGGAGAGAGATACAAGAGTGTTACCATCTGGTCGTAATGCTGTAAATTCTCCTTCTACATCTGGATCTCCTCTACCCAGTATGTCTAGCTCCATGTTTAGCAACCAAGACTATGAGCTTGAGACTTCAAGATCAAGAGAAACTAGGTATCAGGATCTACTGGAACATAGGTCGAATTTCCTTGAACGGAGAAGAAGAATACGATCCCAGGTTCGCGCTCTTCAGCGATTGGGAAGCCGGTTTGAAAATCTTTCTGGACATGACAGATCGTGTATCTTGTCCGGTCAACATAGAAATGGTCGTTGTACATGCCGAATCATTAGTCGTGATACCAATACAAATGATGATACCAATGCTAGAGCTAGCATATCAAGAATTGTTATGCTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCATCAGCAATCTGTGGTTTTATCTTCCCGCCCTTCTGTCTCTTCTATTGGATCTGTTCCTGCACCTATTGAAGTTGTGGAATCCTTGCCTGTGAAATTATACACAAAGTTGCACAAACATCAAGAAGAACCTGTACAATGCTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGCGAGTACTGCCTTGTCATCATGAATTTCATAGAACATGTGTAGACAAGTGGCTGAAGGAGATTCACAGGGTATGCCCACTATGTAGGGGGGACATCTGTATATCTGATTCACTGCCAACATAG | 1713 | 0.4273 | MGSSSSKGTSSSCSGSFRKGRSRGHRGFPSYCLGTTSGSRDTDNDDDEVCDQNKVNGSDATYTSGNEIDSDEVKTESFRKLKSDKSDEIPCMPSNIDLDDWDHTASRTGSSSAHTSSTQSLNPSSRFLSRFSLIPGNISFRLSRTTSLGSSRPCPASSASLSIFNNEDELNLHSGPPDSLINRNETPQHSDVINASFVSRVPIQYHEDASNNLSSNTSALGFHGNLQSSPTLSPIQDVDGNGDGSREVPDMSFFPRRIHNETENLETRHTDRRNGAREPVEPNVSFSRTLSVGRLRDRVLRRSTISDFTFCPLQQEREVRDANQDNGRQVWERDTRVLPSGRNAVNSPSTSGSPLPSMSSSMFSNQDYELETSRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCTCRIISRDTNTNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPIEVVESLPVKLYTKLHKHQEEPVQCYICLVEYEDGDSMRVLPCHHEFHRTCVDKWLKEIHRVCPLCRGDICISDSLPT | 570 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gabi2001g00029 | 570 | MobiDBLite | consensus disorder prediction | 340 | 362 | - | - | |
Gabi2001g00029 | 570 | ProSiteProfiles | Zinc finger RING-type profile. | 517 | 559 | IPR001841 | - | |
Gabi2001g00029 | 570 | MobiDBLite | consensus disorder prediction | 1 | 123 | - | - | |
Gabi2001g00029 | 570 | Pfam | Ring finger domain | 516 | 559 | IPR001841 | - | |
Gabi2001g00029 | 570 | MobiDBLite | consensus disorder prediction | 105 | 123 | - | - | |
Gabi2001g00029 | 570 | MobiDBLite | consensus disorder prediction | 69 | 87 | - | - | |
Gabi2001g00029 | 570 | MobiDBLite | consensus disorder prediction | 54 | 68 | - | - | |
Gabi2001g00029 | 570 | MobiDBLite | consensus disorder prediction | 339 | 362 | - | - | |
Gabi2001g00029 | 570 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 482 | 563 | IPR013083 | - | |
Gabi2001g00029 | 570 | MobiDBLite | consensus disorder prediction | 221 | 282 | - | - | |
Gabi2001g00029 | 570 | SUPERFAMILY | RING/U-box | 495 | 565 | - | - | |
Gabi2001g00029 | 570 | FunFam | Putative RING zinc finger domain superfamily protein | 486 | 564 | - | - | |
Gabi2001g00029 | 570 | MobiDBLite | consensus disorder prediction | 221 | 238 | - | - | |
Gabi2001g00029 | 570 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Gabi2001g00029 | 570 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 569 | - | - | |
Gabi2001g00029 | 570 | MobiDBLite | consensus disorder prediction | 250 | 278 | - | - | |
Gabi2001g00029 | 570 | SMART | ring_2 | 517 | 558 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gabi2001g00029 | Gabi-Chr2001 | 190332 | 194353 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gabi2001g00029 | 229 | 566 | C3H Transcription Factor Family | AT5G45290 | 59.429 | 9.78e-115 | 350 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gabi2001g00029 | - | - | gmx:100815830 | 858.211 |