Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2001g00029 ATGGGGTCCAGTAGCAGCAAAGGCACTTCTTCATCTTGCAGTGGCAGTTTTCGAAAGGGTCGATCTAGGGGCCATAGAGGTTTCCCATCTTATTGTCTAGGAACAACGTCTGGATCTCGTGACACTGATAATGACGACGACGAGGTTTGTGATCAGAATAAAGTAAATGGAAGTGATGCTACGTACACCAGTGGCAATGAAATAGACTCAGATGAAGTGAAAACAGAATCTTTTAGAAAGTTGAAATCTGATAAATCGGATGAAATTCCTTGTATGCCTTCTAACATTGACCTTGATGACTGGGATCACACTGCATCCAGAACTGGTAGCAGCTCGGCCCATACTTCTTCAACTCAGTCCTTGAACCCTTCAAGTCGATTCCTTTCTCGCTTTAGCCTCATTCCTGGTAATATAAGCTTCAGACTTAGCAGAACCACCAGTTTGGGGTCATCTAGGCCTTGCCCTGCTTCTTCTGCAAGCCTCTCAATATTTAACAATGAAGATGAGCTCAATCTGCACTCAGGGCCTCCTGACAGCTTGATTAATAGAAATGAAACTCCACAACATAGTGACGTGATTAATGCATCTTTTGTTAGTCGAGTGCCTATACAGTATCATGAAGATGCTTCTAATAATTTAAGTTCTAATACCTCAGCATTGGGTTTTCATGGCAACTTGCAGAGCAGTCCCACACTTTCTCCTATCCAGGATGTGGATGGAAATGGAGATGGTTCAAGAGAAGTGCCGGATATGAGCTTTTTTCCTCGAAGAATTCATAATGAGACAGAAAATCTTGAGACTAGACATACTGATAGACGAAATGGAGCTCGAGAACCTGTTGAACCTAATGTTAGTTTTAGCAGAACTTTAAGTGTTGGAAGGCTTCGAGACAGAGTTCTCCGCCGATCAACAATATCCGACTTCACCTTTTGCCCTCTGCAACAGGAGAGAGAAGTGAGAGATGCTAATCAGGATAATGGAAGACAAGTATGGGAGAGAGATACAAGAGTGTTACCATCTGGTCGTAATGCTGTAAATTCTCCTTCTACATCTGGATCTCCTCTACCCAGTATGTCTAGCTCCATGTTTAGCAACCAAGACTATGAGCTTGAGACTTCAAGATCAAGAGAAACTAGGTATCAGGATCTACTGGAACATAGGTCGAATTTCCTTGAACGGAGAAGAAGAATACGATCCCAGGTTCGCGCTCTTCAGCGATTGGGAAGCCGGTTTGAAAATCTTTCTGGACATGACAGATCGTGTATCTTGTCCGGTCAACATAGAAATGGTCGTTGTACATGCCGAATCATTAGTCGTGATACCAATACAAATGATGATACCAATGCTAGAGCTAGCATATCAAGAATTGTTATGCTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCATCAGCAATCTGTGGTTTTATCTTCCCGCCCTTCTGTCTCTTCTATTGGATCTGTTCCTGCACCTATTGAAGTTGTGGAATCCTTGCCTGTGAAATTATACACAAAGTTGCACAAACATCAAGAAGAACCTGTACAATGCTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGCGAGTACTGCCTTGTCATCATGAATTTCATAGAACATGTGTAGACAAGTGGCTGAAGGAGATTCACAGGGTATGCCCACTATGTAGGGGGGACATCTGTATATCTGATTCACTGCCAACATAG 1713 0.4273 MGSSSSKGTSSSCSGSFRKGRSRGHRGFPSYCLGTTSGSRDTDNDDDEVCDQNKVNGSDATYTSGNEIDSDEVKTESFRKLKSDKSDEIPCMPSNIDLDDWDHTASRTGSSSAHTSSTQSLNPSSRFLSRFSLIPGNISFRLSRTTSLGSSRPCPASSASLSIFNNEDELNLHSGPPDSLINRNETPQHSDVINASFVSRVPIQYHEDASNNLSSNTSALGFHGNLQSSPTLSPIQDVDGNGDGSREVPDMSFFPRRIHNETENLETRHTDRRNGAREPVEPNVSFSRTLSVGRLRDRVLRRSTISDFTFCPLQQEREVRDANQDNGRQVWERDTRVLPSGRNAVNSPSTSGSPLPSMSSSMFSNQDYELETSRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCTCRIISRDTNTNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPIEVVESLPVKLYTKLHKHQEEPVQCYICLVEYEDGDSMRVLPCHHEFHRTCVDKWLKEIHRVCPLCRGDICISDSLPT 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2001g00029 570 MobiDBLite consensus disorder prediction 340 362 - -
Gabi2001g00029 570 ProSiteProfiles Zinc finger RING-type profile. 517 559 IPR001841 -
Gabi2001g00029 570 MobiDBLite consensus disorder prediction 1 123 - -
Gabi2001g00029 570 Pfam Ring finger domain 516 559 IPR001841 -
Gabi2001g00029 570 MobiDBLite consensus disorder prediction 105 123 - -
Gabi2001g00029 570 MobiDBLite consensus disorder prediction 69 87 - -
Gabi2001g00029 570 MobiDBLite consensus disorder prediction 54 68 - -
Gabi2001g00029 570 MobiDBLite consensus disorder prediction 339 362 - -
Gabi2001g00029 570 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 482 563 IPR013083 -
Gabi2001g00029 570 MobiDBLite consensus disorder prediction 221 282 - -
Gabi2001g00029 570 SUPERFAMILY RING/U-box 495 565 - -
Gabi2001g00029 570 FunFam Putative RING zinc finger domain superfamily protein 486 564 - -
Gabi2001g00029 570 MobiDBLite consensus disorder prediction 221 238 - -
Gabi2001g00029 570 MobiDBLite consensus disorder prediction 1 18 - -
Gabi2001g00029 570 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 569 - -
Gabi2001g00029 570 MobiDBLite consensus disorder prediction 250 278 - -
Gabi2001g00029 570 SMART ring_2 517 558 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2001g00029 Gabi-Chr2001 190332 194353 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2001g00029 229 566 C3H Transcription Factor Family AT5G45290 59.429 9.78e-115 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2001g00029 - - gmx:100815830 858.211