Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2001g00018 ATGAAGCAACCTGCATCAAAGCCATGGAGGCCTTTCACAGCAAATTGCTGCTCAACTGAGGACCAAACTATCTTTAGTAACTTCAGCAGGTGCAAGCCCTCAAAATCAGATTTTTCTAAGAACATTGCACCTTTACCATCATTTAGGAGGCTCTCTTTCTCTGATCTTAGCCGTTCCTCGTCCACACGAATCAATGAAGATCTTGCACAGTCTTTTGGTTCTGATTTGTTTGATTTTCAGCTGAGTGAGCTGCGTGCCATTACTCAGAATTTCTCGAGCAATTTCTTGCTGGGTGAAGGTGGGTTTGGAAAAGTGCATAAGGGTTATATAGATGACAACTTGAAGCAGGGTTTGAAGGCACAACCTGTTGCTGTCAAGCTTTTGGACATTGAAGGCTTTCAAGGACATCGTGAATGGCTTGCAGAAGTGGTTTTTCTTGGGCAGCTAAGACACCCCAATTTGGTTAAGTTGATTGGATATTGTTGTGAAGATGAAGAACGGCTACTTGTCTATGAATTCATGCCACGTGGAAGCTTGGAGAATCACATGTTCAGAAGGCTAACATCACTTCCATGGGCAACAAGATTAAAAATCGCAATAGGTGCTGCTAAAGGCCTTTCCTTCTTGCATGGAGCTGAGAAACCAGTCATTTATAGAGACTTCAAGACTTCCAATGTCTTGCTTGATTCAGACTTCACAGCAAAATTGTCAGATTTTGGACTTGCAAAAATGGGGCCAGAGGGATCGAACACACACGTTTCAACAAGAGTTATGGGCACCTATGGATATGCAGCCCCAGAATACATCTCAACAGGGCACTTAACCACCAAAAGTGATGTCTACAGCTTCGGGGTTGTCCTGCTAGAACTACTTATAGGAAGGAGAGCAATGGATAAGACAAGACCAAAGAGTGAGCAAAACCTTGTGGATTGGTCAAAACCTTACTTGAGTAGCAGTAGGAGGTTGCGGTACATTATGGATCCAAGGCTTGCAGGCCAATATTCTGTGAAGGGTGCAAAGGAAATGGCCCATTTGGCATCCCAATGCATAAGTTTGAATCCTAAAGACAGACCAAGAATGCCAACTATTGTTGAAACTCTTGAAAGCCTACAACAGTTCAAGGACATGGCAGTTACCAGTGGACACTGGCCAGCCGCATCACCAAAACCTACTAGAAATGGTGCTTCCAACAATAAGGTAAAAACCAGAGCCAGTGCATACCACAAGCAACCCTCCCCTACAGTTCCGAGTAGGAAAACTTGA 1263 0.4394 MKQPASKPWRPFTANCCSTEDQTIFSNFSRCKPSKSDFSKNIAPLPSFRRLSFSDLSRSSSTRINEDLAQSFGSDLFDFQLSELRAITQNFSSNFLLGEGGFGKVHKGYIDDNLKQGLKAQPVAVKLLDIEGFQGHREWLAEVVFLGQLRHPNLVKLIGYCCEDEERLLVYEFMPRGSLENHMFRRLTSLPWATRLKIAIGAAKGLSFLHGAEKPVIYRDFKTSNVLLDSDFTAKLSDFGLAKMGPEGSNTHVSTRVMGTYGYAAPEYISTGHLTTKSDVYSFGVVLLELLIGRRAMDKTRPKSEQNLVDWSKPYLSSSRRLRYIMDPRLAGQYSVKGAKEMAHLASQCISLNPKDRPRMPTIVETLESLQQFKDMAVTSGHWPAASPKPTRNGASNNKVKTRASAYHKQPSPTVPSRKT 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2001g00018 420 FunFam Serine/threonine-protein kinase PBS1 174 382 - -
Gabi2001g00018 420 Gene3D Transferase(Phosphotransferase) domain 1 174 382 - -
Gabi2001g00018 420 Pfam Protein tyrosine and serine/threonine kinase 97 367 IPR001245 GO:0004672|GO:0006468
Gabi2001g00018 420 PANTHER OS01G0588500 PROTEIN-RELATED 62 371 - -
Gabi2001g00018 420 SUPERFAMILY Protein kinase-like (PK-like) 71 368 IPR011009 -
Gabi2001g00018 420 Gene3D Phosphorylase Kinase; domain 1 53 173 - -
Gabi2001g00018 420 ProSitePatterns Protein kinases ATP-binding region signature. 97 126 IPR017441 GO:0005524
Gabi2001g00018 420 CDD STKc_IRAK 97 370 - -
Gabi2001g00018 420 ProSiteProfiles Protein kinase domain profile. 91 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2001g00018 420 MobiDBLite consensus disorder prediction 381 420 - -
Gabi2001g00018 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Gabi2001g00018 420 MobiDBLite consensus disorder prediction 390 420 - -
Gabi2001g00018 420 FunFam Serine/threonine-protein kinase BIK1 57 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2001g00018 Gabi-Chr2001 117134 119401 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2001g00018 79 400 Glycoside Hydrolase AT3G07070 49.080 2.08e-102 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi2001g00018 PK_Tyr_Ser-Thr 1.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2001g00018 - - gmx:100814241 751.895