Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2001g00006 ATGTTCAGTGGTGGAGGTGACGATGCACTGGCGGCTCGCCTCGGCATGATGACGCCGTCGTTGCTGAATCCGGCGACGCCGTCGGTGGTATCGGGCGAGATGTCTCCGGCGCCGTCGAGGGAGGAGAGGGGTCCGGCTCAGACGCAGTGGAGCCAGCAGGAGACGAGAGAGTTCATAGAGATCCGCGCGGAGCTTGAGAGGGACTTCACTGCTTCGAAGCGGAACAAGACGCTTTGGGAGGTTGTTAGCTCCAAGATGAGGGAGAGAGGGTTCAGAAGGAGCCCTGAACAGTGCAAATGCAAGTGGAAGAACCTCGTTAATCGCTATAAGGGAAAAGAAACATCTGATCCAGAGCATGGCAAGCAATGCCCATTTTTTGAAGAATTGCATGCAGTCTTTACCCAAAGAGCACATAAAATGCAACAGTCCCTTCTTGAATCTGAAACTCGATCCGCTCAAACAAAGAAAGGGGTGAAAAGATTAAGTGGAGATCGGTCCTCAGAGGAATTCTCAGAAGATGATGAGGTCGAATATGACAGTGAAGAGGAGAGACCTCCCAAAAGCAATACCCGCAAAAGGAAAGCTGACAAAGTTGCAATGGAGAAGTCTTCAAGGGCAAACATTCCATCAAATGCTGCCAGTAACAATATTAGTAGTATTCAGGAAATGCTCAAGGAATTTTTCCAGCACCAGCTAAGGATGGAGATGCAGTGGAGGGAGATGATGGAAAGGCGTGCTCATGAAAGACAGCTGTTTGAGCACGAATGGCGTCAATCGATGGAAAAGCTTGAGAGGGAGAGATTAATGATTGAACAGGCATGGAGGGAGAGAGAAGAACAGAGGAGAATGAGAGAAGAGAATAGAGCAGAGAGAAGGGATGCTTTGTTGACGACCCTTTTGAACAAACTCATTCATGAATCTAACTAA 927 0.4876 MFSGGGDDALAARLGMMTPSLLNPATPSVVSGEMSPAPSREERGPAQTQWSQQETREFIEIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKNLVNRYKGKETSDPEHGKQCPFFEELHAVFTQRAHKMQQSLLESETRSAQTKKGVKRLSGDRSSEEFSEDDEVEYDSEEERPPKSNTRKRKADKVAMEKSSRANIPSNAASNNISSIQEMLKEFFQHQLRMEMQWREMMERRAHERQLFEHEWRQSMEKLERERLMIEQAWREREEQRRMREENRAERRDALLTTLLNKLIHESN 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2001g00006 308 Pfam Myb/SANT-like DNA-binding domain 48 131 IPR044822 -
Gabi2001g00006 308 Gene3D - 50 111 - -
Gabi2001g00006 308 ProSiteProfiles Myb-like domain profile. 42 106 IPR001005 -
Gabi2001g00006 308 MobiDBLite consensus disorder prediction 140 214 - -
Gabi2001g00006 308 FunFam Zinc finger and SCAN domain-containing 20 50 111 - -
Gabi2001g00006 308 CDD GT1 49 113 - -
Gabi2001g00006 308 MobiDBLite consensus disorder prediction 152 167 - -
Gabi2001g00006 308 SMART sant 46 108 IPR001005 -
Gabi2001g00006 308 MobiDBLite consensus disorder prediction 181 201 - -
Gabi2001g00006 308 PANTHER FI21293P1 41 305 - -
Gabi2001g00006 308 MobiDBLite consensus disorder prediction 19 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2001g00006 Gabi-Chr2001 39520 42088 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2001g00006 49 308 Trihelix Transcription Factor Family AT2G38250 43.893 1.64e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gabi2001g00006 Myb_DNA-bind_4 1.8e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2001g00006 - - gmx:100812635 447.973