Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2001g00003 ATGAAGCCCTTTTCTCTCATCATACATGAATTTGGTTCTACATGCCTTCCCCTATTTCTTCTCTTAATTACTTTGAACTCACTTTGGTTTGGCCCAAACACAACTGCCTCTGCATCAGGAAATGAAACTGATCACTTGGCATTGCTCAAATTCAAGGAATCAATATCCAATGACCCATCTGGAATCTTGTTCTCTTGGAATAGTTCTATCCACTTCTGCAACTGGCATGGACTCACATGCAGCCCCATGCATCAAAGAGTTACCGAGTTGAACCTACAAGGTTATCAATTGCATGGGCTCATATCTCCACAAATTGGCAATCTTTCTTTTCTTATAGAACTCAACCTCGCAAATAACAACTTCTACGGAAAAATCCCACAAGAATTGGGTCGATTGTTACAACTGCAGCAACTCTCTCTCGTCAATAACTCATTGACTGGGGGAATTCCTACAAACTTGACAAGTTGCTCTGATCTCAAAAGCTTATTATTGGGAGGGAATAATCTTATTAGCAGCATACCAATTGAAATTGCCTCTCTCCAGAAACTTCAGATATTGTACGTTGCAAGAAACAATTTAACCGGAGGAGTCCCGCCATTCATAGGAAATTTTTCATCCCTAAATCATCTCAGGGTGGGTTATAATAACTTGGAGGGAGAAATTCCACAAGAAATATGCCGCCTTAAAAACCTGACATTGATAGCAGTGGGTGTAAACAAATTGTCGGGTACATTTCCTTCTTGTCTTTATAATATGTCATCTCTTACTATAATCACAGCTACAGAGAACCAATTTAATGGCTCTCTTCCACCCAATATGTTCCTCACCCTTCCCAATCTCCAAGACTTTGAAATTGGTGAGAATCAAATCTCAGGTTTGATTCCCACTTCCATTGCAAATGCTTCTATCCTTCAAGTACTTGATATCGGTGCAAACCATTTTGTAGGACAAGTTCCGAGTATGGGGAAGCTAAGAGATCTGTATTTCCTACAATTGTCTGAAAGCAATCTAGGTGGCAATTTAACTACGGATTTGGATTTCTTAAAATCATTGACAAACTGTAGTAAGTTGCAACTATTAGGTATCGCCAACAATAAGTTTGTAGGTCATTTGCCAAATTGCTTGGGTAATTTATCCTCCCAACTCACTCAACTAGATCTTGGGGGTAATCAGATATCAGGACAAATTCCTACAGAATTAGGAAATCTAATTAGCTTAACTCTCTTGGGCATGGAAAATAGTCGTCTTGAAGGGATTATTCCATCTGCTTTTGGAAAGTTTCAGAATATGCAACTTTTATATTTGGGTGGAAACAAGCTGTCAGGAAATATACCATCCATCATAGGCAACCTCAGTTTGTTGTTTTATTTGGATTTAGACCAAAATTTGTTAGAAGGAAATATTCCTACAAGTATAGGGAATTGTCAAAAGTTGCAAGTTCTAGACCTTTCCCGGAACTACCTTAGAGGAACTATACCCTTAGAGATTTTTAGTCTTTCCTCTTTAACAAATTTACTAGACTTGTCACATAACTCATTAAGTGGTAGTCTACCAAATGAAGTGGGCCAATTAAAAAATATTAATGTGCTTAATGTCTCTGAAAATCATCTGTCTGGTAATATTCCTATAACCATTGGAGAATGCTCAAGCTTGGAGTACCTTTATTTGAAGGGGAATTCTTTCCTTGGAATCATACCATCCTCTTTGGCTTCACTAAAAGGTCTTCGACATTTAGATCTATCACGAAATCACTTGTCTGGATTAATCCCTGATGTTTTGCAAAATATTGCTTTTTTAGAATACTTAAATGTATCATTTAACATGTTGGATGGCGAGGTACCAACTAAAGGTGTCTTTCGAAATGCAAGTGAGTTAGTAGTGACTGGAAACAACAAGCTTTGTGGAGGTGTTTTAGAGCTGCATCTACCGCCATGCCCTGTCAAAGGTGACCAACATGCAAAACACCACAATTCCAGGTTGATAGCAGTGATAATTAGTGTAGTTTCTTTTCTTCTGATACTTTCATTCGTTCTCACTTTCTTTTGGATGAGGAAAAGAAGCAAGAAACAATCATCTGATTCACCAACAATTGACCAGTTGGCCAAGGTTTCATACCAAAATCTACACCATGGAACCGATGGGTTTTCAACAAGAAACTTGATAGGATCTGGAAGTTTCGGCTCTGTGTACAAAGGAACTATTGAGCCAGAAGACACAGTTGTTGCCATAAAAGTCCTAAATCTTCAAAAGAAGGGAGCTCACAAGAGTTTCATGGCTGAATGCAATGCACTCAAAAATATTAGGCATCGAAATCTGGTTAAGATTTTAACATGTTGTTCTAGCATAGATTTCAAAGGTCAAGAATTTAAAGCTCTTGTTTTTGAGTACATGACAAATGGAAGCTTAGAAAGTTGGTTGCATCCAGCAGCAGATATTACAGATCGGCCTAGATCTTTGAACCTTGAGGAAATGTTAAATATTATTAATGATGTTGCTTCAGCAGTTCATTATCTTCACTACGAATGTGAGCAAGCTATCATTCATTGTGATTTGAAGCCTAGTAATGTTCTTCTTGATGATTGCATGGTAGCTCATGTAAGTGATTTTGGCCTAGCACGAATACTCTCAAGTGTTGGAGTCTCTTTGATGCAAAGTAGCACAATTGGAATAAAGGGAACTATTGGTTATGCTCCTCCAGAGTACGGAATGGGTTCTGAGGTGTCAATTGAAGGTGATATGTATAGCTTCGGAATTCTGATTTTAGAACTGCTAACCGGAAGGAGACCAACAGATGAAATGTTTAAAGATGGTCACAATCTCCACAATTATGTTAAAATTTCATTTTTGAATAACCTTTTGCAGATTGTGGACCTGACTATTCTCAACGAAGAAAATGCTACTAGCAATGAGAACTTTGGCCTTATGCATCCTAATGTAGAAAATTGTTTGCGTTCGCTTTTTAAGATTGCACTTGCTTGTTCACTGGAATCACCAAAAGAAAGAATAAGCATGATTGATGTCATGAAGGAGCTTAATCTAATCAAAAGTTTCTTCCTTTCATAA 3063 0.3777 MKPFSLIIHEFGSTCLPLFLLLITLNSLWFGPNTTASASGNETDHLALLKFKESISNDPSGILFSWNSSIHFCNWHGLTCSPMHQRVTELNLQGYQLHGLISPQIGNLSFLIELNLANNNFYGKIPQELGRLLQLQQLSLVNNSLTGGIPTNLTSCSDLKSLLLGGNNLISSIPIEIASLQKLQILYVARNNLTGGVPPFIGNFSSLNHLRVGYNNLEGEIPQEICRLKNLTLIAVGVNKLSGTFPSCLYNMSSLTIITATENQFNGSLPPNMFLTLPNLQDFEIGENQISGLIPTSIANASILQVLDIGANHFVGQVPSMGKLRDLYFLQLSESNLGGNLTTDLDFLKSLTNCSKLQLLGIANNKFVGHLPNCLGNLSSQLTQLDLGGNQISGQIPTELGNLISLTLLGMENSRLEGIIPSAFGKFQNMQLLYLGGNKLSGNIPSIIGNLSLLFYLDLDQNLLEGNIPTSIGNCQKLQVLDLSRNYLRGTIPLEIFSLSSLTNLLDLSHNSLSGSLPNEVGQLKNINVLNVSENHLSGNIPITIGECSSLEYLYLKGNSFLGIIPSSLASLKGLRHLDLSRNHLSGLIPDVLQNIAFLEYLNVSFNMLDGEVPTKGVFRNASELVVTGNNKLCGGVLELHLPPCPVKGDQHAKHHNSRLIAVIISVVSFLLILSFVLTFFWMRKRSKKQSSDSPTIDQLAKVSYQNLHHGTDGFSTRNLIGSGSFGSVYKGTIEPEDTVVAIKVLNLQKKGAHKSFMAECNALKNIRHRNLVKILTCCSSIDFKGQEFKALVFEYMTNGSLESWLHPAADITDRPRSLNLEEMLNIINDVASAVHYLHYECEQAIIHCDLKPSNVLLDDCMVAHVSDFGLARILSSVGVSLMQSSTIGIKGTIGYAPPEYGMGSEVSIEGDMYSFGILILELLTGRRPTDEMFKDGHNLHNYVKISFLNNLLQIVDLTILNEENATSNENFGLMHPNVENCLRSLFKIALACSLESPKERISMIDVMKELNLIKSFFLS 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2001g00003 1020 Pfam Leucine rich repeat 405 464 IPR001611 GO:0005515
Gabi2001g00003 1020 Pfam Leucine rich repeat 550 609 IPR001611 GO:0005515
Gabi2001g00003 1020 Pfam Leucine rich repeat N-terminal domain 42 81 IPR013210 -
Gabi2001g00003 1020 FunFam LRR receptor-like serine/threonine-protein kinase EFR 686 796 - -
Gabi2001g00003 1020 ProSitePatterns Protein kinases ATP-binding region signature. 721 744 IPR017441 GO:0005524
Gabi2001g00003 1020 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 353 1012 - -
Gabi2001g00003 1020 FunFam Piriformospora indica-insensitive protein 2 173 271 - -
Gabi2001g00003 1020 Gene3D Transferase(Phosphotransferase) domain 1 797 1017 - -
Gabi2001g00003 1020 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 797 1020 - -
Gabi2001g00003 1020 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 43 155 - -
Gabi2001g00003 1020 Gene3D Phosphorylase Kinase; domain 1 677 796 - -
Gabi2001g00003 1020 Gene3D Ribonuclease Inhibitor 171 270 IPR032675 -
Gabi2001g00003 1020 Gene3D Ribonuclease Inhibitor 271 350 IPR032675 -
Gabi2001g00003 1020 SUPERFAMILY L domain-like 380 635 - -
Gabi2001g00003 1020 Pfam Protein kinase domain 717 1008 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2001g00003 1020 Gene3D Ribonuclease Inhibitor 43 157 IPR032675 -
Gabi2001g00003 1020 SUPERFAMILY Protein kinase-like (PK-like) 689 1012 IPR011009 -
Gabi2001g00003 1020 ProSiteProfiles Protein kinase domain profile. 715 1018 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2001g00003 1020 ProSitePatterns Serine/Threonine protein kinases active-site signature. 846 858 IPR008271 GO:0004672|GO:0006468
Gabi2001g00003 1020 SMART LRR_typ_2 277 300 IPR003591 -
Gabi2001g00003 1020 SMART LRR_typ_2 403 426 IPR003591 -
Gabi2001g00003 1020 SMART LRR_typ_2 499 524 IPR003591 -
Gabi2001g00003 1020 SMART LRR_typ_2 108 132 IPR003591 -
Gabi2001g00003 1020 SMART LRR_typ_2 572 595 IPR003591 -
Gabi2001g00003 1020 SMART LRR_typ_2 451 475 IPR003591 -
Gabi2001g00003 1020 SMART LRR_typ_2 204 228 IPR003591 -
Gabi2001g00003 1020 FunFam LRR receptor-like serine/threonine-protein kinase EFR 343 651 - -
Gabi2001g00003 1020 SMART serkin_6 715 1018 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2001g00003 1020 Gene3D Ribonuclease Inhibitor 351 645 IPR032675 -
Gabi2001g00003 1020 SUPERFAMILY L domain-like 41 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2001g00003 Gabi-Chr2001 19631 23208 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2001g00003 41 1019 Receptor kinase-like Gene Family AT3G47570 47.432 0.0 864
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gabi2001g00003 Pkinase 1.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2001g00003 - - gmx:100792724 1379.39