Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2001g00002 ATGAAGCCCTTTTCTCTCATCATACATGAATTTGGTTCTACATGCCTTCCCCTATTTCTTCTCTTAATTACTTTGAACTCACTTTGGTTTGGCCCAAACACAACTGCCTCTGCATCAGGAAATGAAACTGATCACTTGGCATTGCTCAAATTCAAGGAATCAATATCCAATGACCCATCTGGAATCTTGTTCTCTTGGAATAGTTCTATCCACTTCTGCAACTGGCATGGACTCACATGCAGCCCCATGCATCAAAGAGTTACCGAGTTGAACCTACAAGGTTATCAATTGCATGGGCTCATATCTCCACAAATTGGCAATCTTTCTTTTCTTATAGAACTCAACCTCGCAAATAACAACTTCTACGGAAAAATCCCACAAGAATTGGGTCGATTGTTACAACTGCAGCAACTCTCTCTCGTCAATAACTCATTGACTGGGGGAATTCCTACAAACTTGACAAGTTGCTCTGATCTCAAAAGCTTATTATTGGGAGGGAATAATCTTATTAGCAGCATACCAATTGAAATTGCCTCTCTCCAGAAACTTCAGATATTGTACGTTGCAAGAAACAATTTAACCGGAGGAGTCCCGCCATTCATAGGAAATTTTTCATCCCTAAATCATCTCAGGGTGGGTTATAATAACTTGGAGGGAGAAATTCCACAAGAAATATGCCGCCTTAAAAACCTGACATTGATAGCAGTGGGTGTAAACAAATTGTCGGGTACATTTCCTTCTTGTCTTTATAATATGTCATCTCTTACTATAATCACAGCTACAGAGAACCAATTTAATGGCTCTCTTCCACCCAATATGTTCCTCACCCTTCCCAATCTCCAAGACTTTGAAATTGGTGAGAATCAAATCTCAGGTTTGATTCCCACTTCCATTGCAAATGCTTCTATCCTTCAAGTACTTGATATCGGTGCAAACCATTTTGTAGGACAAGTTCCGAGTATGGGGAAGCTAAGAGATCTGTATTTCCTACAATTGTCTGAAAGCAATCTAGGTGGCAATTTAACTACGGATTTGGATTTCTTAAAATCATTGACAAACTGTAGTAAGTTGCAACTATTAGGTATCGCCAACAATAAGTTTGTAGGTCATTTGCCAAATTGCTTGGGTAATTTATCCTCCCAACTCACTCAACTAGATCTTGGGGGTAATCAGATATCAGGACAAATTCCTACAGAATTAGGAAATCTAATTAGCTTAACTCTCTTGGGCATGGAAAATAGTCGTCTTGAAGGGATTATTCCATCTGCTTTTGGAAAGTTTCAGAATATGCAACTTTTATATTTGGGTGGAAACAAGCTGTCAGGAAATATACCATCCATCATAGGCAACCTCAGTTTGTTGTTTTATTTGGATTTAGACCAAAATTTGTTAGAAGGAAATATTCCTACAAGTATAGGGAATTGTCAAAAGTTGCAAGTTCTAGACCTTTCCCGGAACTACCTTAGAGGAACTATACCCTTAGAGATTTTTAGTCTTTCCTCTTTAACAAATTTACTAGACTTGTCACATAACTCATTAAGTGGTAGTCTACCAAATGAAGTGGGCCAATTAAAAAATATTAATGTGCTTAATGTCTCTGAAAATCATCTGTCTGGTAATATTCCTATAACCATTGGAGAATGCTCAAGCTTGGAGTACCTTTATTTGAAGGGGAATTCTTTCCTTGGAATCATACCATCCTCTTTGGCTTCACTAAAAGGTCTTCGACATTTAGATCTATCACGAAATCACTTGTCTGGATTAATCCCTGATGTTTTGCAAAATATTGCTTTTTTAGAATACTTAAATGTATCATTTAACATGTTGGATGGCGAGGTACCAACTAAAGGTGTCTTTCGAAATGCAAGTGAGTTAGTAGTGACTGGAAACAACAAGCTTTGTGGAGGTGTTTTAGAGCTGCATCTACCGCCATGCCCTGTCAAAGGTGACCAACATGCAAAACACCACAATTCCAGAAGCAAGAAACAATCATCTGATTCACCAACAATTGACCAGTTGGCCAAGGTTTCATACCAAAATCTACACCATGGAACCGATGGGTTTTCAACAAGAAACTTGATAGGATCTGGAAGTTTCGGCTCTGTGTACAAAGGAACTATTGAGCCAGAAGACACAGTTGTTGCCATAAAAGTCCTAAATCTTCAAAAGAAGGGAGCTCACAAGAGTTTCATGGCTGAATGCAATGCACTCAAAAATATTAGGCATCGAAATCTGGTTAAGATTTTAACATGTTGTTCTAGCATAGATTTCAAAGGTCAAGAATTTAAAGCTCTTGTTTTTGAGTACATGACAAATGGAAGCTTAGAAAGTTGGTTGCATCCAGCAGCAGATATTACAGATCGGCCTAGATCTTTGAACCTTGAGGAAATGTTAAATATTATTAATGATGTTGCTTCAGCAGTTCATTATCTTCACTACGAATGTGAGCAAGCTATCATTCATTGTGATTTGAAGCCTAGTAATGTTCTTCTTGATGATTGCATGGTAGCTCATGTAAGTGATTTTGGCCTAGCACGAATACTCTCAAGTGTTGGAGTCTCTTTGATGCAAAGTAGCACAATTGGAATAAAGGGAACTATTGGTTATGCTCCTCCAGAGTACGGAATGGGTTCTGAGGTGTCAATTGAAGGTGATATGTATAGCTTCGGAATTCTGATTTTAGAACTGCTAACCGGAAGGAGACCAACAGATGAAATGTTTAAAGATGGTCACAATCTCCACAATTATGTTAAAATTTCATTTTTGAATAACCTTTTGCAGATTGTGGACCTGACTATTCTCAACGAAGAAAATGCTACTAGCAATGAGAACTTTGGCCTTATGCATCCTAATGTAGAAAATTGTTTGCGTTCGCTTTTTAAGATTGCACTTGCTTGTTCACTGGAATCACCAAAAGAAAGAATAAGCATGATTGATGTCATGAAGGAGCTTAATCTAATCAAAAGTTTCTTCCTTTCATAA 2982 0.3789 MKPFSLIIHEFGSTCLPLFLLLITLNSLWFGPNTTASASGNETDHLALLKFKESISNDPSGILFSWNSSIHFCNWHGLTCSPMHQRVTELNLQGYQLHGLISPQIGNLSFLIELNLANNNFYGKIPQELGRLLQLQQLSLVNNSLTGGIPTNLTSCSDLKSLLLGGNNLISSIPIEIASLQKLQILYVARNNLTGGVPPFIGNFSSLNHLRVGYNNLEGEIPQEICRLKNLTLIAVGVNKLSGTFPSCLYNMSSLTIITATENQFNGSLPPNMFLTLPNLQDFEIGENQISGLIPTSIANASILQVLDIGANHFVGQVPSMGKLRDLYFLQLSESNLGGNLTTDLDFLKSLTNCSKLQLLGIANNKFVGHLPNCLGNLSSQLTQLDLGGNQISGQIPTELGNLISLTLLGMENSRLEGIIPSAFGKFQNMQLLYLGGNKLSGNIPSIIGNLSLLFYLDLDQNLLEGNIPTSIGNCQKLQVLDLSRNYLRGTIPLEIFSLSSLTNLLDLSHNSLSGSLPNEVGQLKNINVLNVSENHLSGNIPITIGECSSLEYLYLKGNSFLGIIPSSLASLKGLRHLDLSRNHLSGLIPDVLQNIAFLEYLNVSFNMLDGEVPTKGVFRNASELVVTGNNKLCGGVLELHLPPCPVKGDQHAKHHNSRSKKQSSDSPTIDQLAKVSYQNLHHGTDGFSTRNLIGSGSFGSVYKGTIEPEDTVVAIKVLNLQKKGAHKSFMAECNALKNIRHRNLVKILTCCSSIDFKGQEFKALVFEYMTNGSLESWLHPAADITDRPRSLNLEEMLNIINDVASAVHYLHYECEQAIIHCDLKPSNVLLDDCMVAHVSDFGLARILSSVGVSLMQSSTIGIKGTIGYAPPEYGMGSEVSIEGDMYSFGILILELLTGRRPTDEMFKDGHNLHNYVKISFLNNLLQIVDLTILNEENATSNENFGLMHPNVENCLRSLFKIALACSLESPKERISMIDVMKELNLIKSFFLS 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2001g00002 993 Gene3D Ribonuclease Inhibitor 193 254 IPR032675 -
Gabi2001g00002 993 SMART serkin_6 688 991 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2001g00002 993 Gene3D Transferase(Phosphotransferase) domain 1 770 990 - -
Gabi2001g00002 993 Gene3D Ribonuclease Inhibitor 257 351 IPR032675 -
Gabi2001g00002 993 Gene3D Ribonuclease Inhibitor 40 192 IPR032675 -
Gabi2001g00002 993 SUPERFAMILY Protein kinase-like (PK-like) 662 985 IPR011009 -
Gabi2001g00002 993 FunFam LRR receptor-like serine/threonine-protein kinase EFR 659 769 - -
Gabi2001g00002 993 SUPERFAMILY L domain-like 380 635 - -
Gabi2001g00002 993 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 43 155 - -
Gabi2001g00002 993 Pfam Leucine rich repeat 405 464 IPR001611 GO:0005515
Gabi2001g00002 993 Pfam Leucine rich repeat 550 609 IPR001611 GO:0005515
Gabi2001g00002 993 Pfam Protein kinase domain 690 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2001g00002 993 Gene3D Ribonuclease Inhibitor 352 645 IPR032675 -
Gabi2001g00002 993 FunFam Piriformospora indica-insensitive protein 2 173 271 - -
Gabi2001g00002 993 ProSitePatterns Protein kinases ATP-binding region signature. 694 717 IPR017441 GO:0005524
Gabi2001g00002 993 SMART LRR_typ_2 277 300 IPR003591 -
Gabi2001g00002 993 SMART LRR_typ_2 403 426 IPR003591 -
Gabi2001g00002 993 SMART LRR_typ_2 499 524 IPR003591 -
Gabi2001g00002 993 SMART LRR_typ_2 108 132 IPR003591 -
Gabi2001g00002 993 SMART LRR_typ_2 572 595 IPR003591 -
Gabi2001g00002 993 SMART LRR_typ_2 204 228 IPR003591 -
Gabi2001g00002 993 SMART LRR_typ_2 451 475 IPR003591 -
Gabi2001g00002 993 ProSitePatterns Serine/Threonine protein kinases active-site signature. 819 831 IPR008271 GO:0004672|GO:0006468
Gabi2001g00002 993 Gene3D Phosphorylase Kinase; domain 1 648 769 - -
Gabi2001g00002 993 ProSiteProfiles Protein kinase domain profile. 688 991 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2001g00002 993 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 770 993 - -
Gabi2001g00002 993 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 351 985 - -
Gabi2001g00002 993 MobiDBLite consensus disorder prediction 648 669 - -
Gabi2001g00002 993 SUPERFAMILY L domain-like 41 337 - -
Gabi2001g00002 993 Pfam Leucine rich repeat N-terminal domain 42 81 IPR013210 -
Gabi2001g00002 993 FunFam LRR receptor-like serine/threonine-protein kinase EFR 343 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2001g00002 Gabi-Chr2001 19629 23209 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2001g00002 41 992 Receptor kinase-like Gene Family AT3G47570 46.224 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gabi2001g00002 Pkinase 1.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2001g00002 - - gmx:100792724 1339.71