Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2001g00001 TTCGTGAACCAATGCCGGAAGGTGGAAGAAGTTTATGGTGTGCTGAAAAGTAAGAAGTCTTCCGAGGCACAAGCATCTGGTGCTAGTGGAGCAACTGGCTCTACTTCAGAAAAGGGTAAGAAGATGGATGACAGGAATATTAAAGAAAAATTACAAGCTAGACAGTCTGAAGAAAAGTTTAAAAGAAGCGGGAGTCAACAGAGTTGGGACAATGAAAGACCTATTGTGCCAAAGTGTGACAATTGTGGCAGGCATCACAAGGGCGTTTGTTTGATGGGCCAGAACGTATGTTTTAAGTGTGGTAGACCTGGTCACTATGCGAGGGATTGTCCCCAGATTGTGGGATGGGTTGCTCACGTGCAAGTGGTCTATGACCCTTCAGCAGCGGCACATAACGGGGTGTTACATCTACCAAATGAAGTGGGCCAATTGAAAAATATTGATGAGCTTCATGTCTCTGAGAATCACTTATCTGGTAATATTCCTGGAACCATTGGAGAATGCTCAAGCTTGGAGTACCTTTATTTGGCCGGGAATTCCTTCCATGGAATCATACCATCCTCTATGGCTTCACTAAAAGGTCTTCGACATTTAGACCTATCACGAAATCACTTGTCTGGATCAATTCCTGATGTTTTACAGAATATTGCTTTCTTAGAATACTTAAATGTATCATTCAACATGTTGGATGGTGAGGTACCAACTAAAGGTGTCTTTAGAAATGCAAGTGAGTTAGCAGTGACTGGAAACAACAAGCTTTGTGGAGGTGTGCTAGAGCTGCATCTACCGCCATGCCCTGTCAAAGGTAACCAACATGCAAAACACCATAATTTCAAGTTGATAACAGCAATAGTTAGTGTAGTTGCTTTTCTTCTCATATTGTCATTCATCCTCACTTTCTACTGGATGAGGAAAAGAAGCAAGAAACTATCTTCAGATTCACCAACAATTGGCCAGCTGGCCAAAGTTTCATACCAAAACCTACACAGTGGAACTGATGGGTTTTCAACAAGAAACTTGATAGGATCTGGAAGTTTGGGCTTTGTGTACAAAGGAATTATTGAGTCAGAAGACACAATTGTTGTCATAAAGGTCCTAAATCTTCAAAAGAAGGGAGTTCACAAGAGCTTCATTGCTGAATGCAATGCACTCAAAAATATCCGGCATCGAAATCTAGTTAAGATTTTAACATGTTGTTCTAGCACAGATTTCAAAGGTCAAGAATTTAAAGCTCTTGTTTTTGAGTACATGACAAATGGAAGCTTAGAAAGTTGGTTGCATCCTACAGCAAATACTGCAAATCAACCCAAATCATTGAACCTTGAGCAAAGGCTAAATATTATTAGTGATGTTGCTTCAGCAGTACATTATCTTCATTATGAATGTGAGCAAGTTGTCATTCATTGTGATCTGAAGCCTGGCAATGTTCTTCTTGATGATTGCATGGTAGCTCATGTGAGTGATTTTGGCCTAGCAAGATTGCTCTCAAGTTTTGGAGTCTCTCTGACGCAAAGTAGCACAATTGGAATAAAGGGAACTGTTGGTTATGCTCCTCCAGAGTATGGAATGGGTTCTGAGGTGTCAATTGAAGGCGATATGTATAGCTTCGGAATTTTGATTTTAGAAATGTTAACAGGAAGGAGACCCACAGATGAAATGTTTAAAGATGGTCACAATCTCCATAATTATGTTAAAAGTTCACTTTCGAATCACCTTTTGCGAATTGTGGACCTGACTATTCTTACCAATGAAGAAAATGCTACTGACAATGAGAACCTTGGCCTTATGCATCCTAATGTAGAAAAATGTTTGCATTCACTTTTCAAGATTGCACTTGCTTGTTCAATGGAATCACCAAAAGAAAGAATGGGTATGATTGATGTCAGAAAGGAGCTTAATCTAATCAAAAGTTTCTTCCCTTCTGGAATTTAA 1932 0.397 FVNQCRKVEEVYGVLKSKKSSEAQASGASGATGSTSEKGKKMDDRNIKEKLQARQSEEKFKRSGSQQSWDNERPIVPKCDNCGRHHKGVCLMGQNVCFKCGRPGHYARDCPQIVGWVAHVQVVYDPSAAAHNGVLHLPNEVGQLKNIDELHVSENHLSGNIPGTIGECSSLEYLYLAGNSFHGIIPSSMASLKGLRHLDLSRNHLSGSIPDVLQNIAFLEYLNVSFNMLDGEVPTKGVFRNASELAVTGNNKLCGGVLELHLPPCPVKGNQHAKHHNFKLITAIVSVVAFLLILSFILTFYWMRKRSKKLSSDSPTIGQLAKVSYQNLHSGTDGFSTRNLIGSGSLGFVYKGIIESEDTIVVIKVLNLQKKGVHKSFIAECNALKNIRHRNLVKILTCCSSTDFKGQEFKALVFEYMTNGSLESWLHPTANTANQPKSLNLEQRLNIISDVASAVHYLHYECEQVVIHCDLKPGNVLLDDCMVAHVSDFGLARLLSSFGVSLTQSSTIGIKGTVGYAPPEYGMGSEVSIEGDMYSFGILILEMLTGRRPTDEMFKDGHNLHNYVKSSLSNHLLRIVDLTILTNEENATDNENLGLMHPNVEKCLHSLFKIALACSMESPKERMGMIDVRKELNLIKSFFPSGI 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2001g00001 643 Gene3D Ribonuclease Inhibitor 129 274 IPR032675 -
Gabi2001g00001 643 Pfam Leucine rich repeat 170 229 IPR001611 GO:0005515
Gabi2001g00001 643 Gene3D Phosphorylase Kinase; domain 1 298 416 - -
Gabi2001g00001 643 Pfam Zinc knuckle 95 112 IPR001878 GO:0003676|GO:0008270
Gabi2001g00001 643 MobiDBLite consensus disorder prediction 37 66 - -
Gabi2001g00001 643 Gene3D Transferase(Phosphotransferase) domain 1 417 638 - -
Gabi2001g00001 643 SMART c2hcfinal6 96 112 IPR001878 GO:0003676|GO:0008270
Gabi2001g00001 643 FunFam LRR receptor-like serine/threonine-protein kinase EFR 306 416 - -
Gabi2001g00001 643 ProSiteProfiles Zinc finger CCHC-type profile. 97 112 IPR001878 GO:0003676|GO:0008270
Gabi2001g00001 643 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 138 262 - -
Gabi2001g00001 643 Pfam Protein kinase domain 337 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2001g00001 643 MobiDBLite consensus disorder prediction 17 70 - -
Gabi2001g00001 643 SUPERFAMILY L domain-like 132 245 - -
Gabi2001g00001 643 Gene3D - 91 113 - -
Gabi2001g00001 643 SUPERFAMILY Protein kinase-like (PK-like) 308 633 IPR011009 -
Gabi2001g00001 643 PANTHER OS04G0122200 PROTEIN 136 635 - -
Gabi2001g00001 643 MobiDBLite consensus disorder prediction 19 36 - -
Gabi2001g00001 643 ProSiteProfiles Protein kinase domain profile. 335 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2001g00001 643 SMART serkin_6 335 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2001g00001 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Gabi2001g00001 643 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 417 641 - -
Gabi2001g00001 643 SUPERFAMILY Retrovirus zinc finger-like domains 83 121 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2001g00001 Gabi-Chr2001 2317 8374 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2001g00001 117 639 Receptor kinase-like Gene Family AT3G47570 46.355 1.54e-155 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gabi2001g00001 Pkinase 4.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2001g00001 - - gmx:100792724 792.727