Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1g00006 ATGGATGAAGATGTAATAAATTCTGCAAACTTCAATGAGAATGAAGATGACATGCTTGATAAACTGGGAGATGACATATTGAATGAACCAATTAACAATATGTCAAATAGTGTTGTGTTGACGCCGACAAAGAATATTGATTGTTTGATTGAGGTTGGAATGGAATTTTCTGAACGAAAGGATATATTAGACTTGTTCACAACATTTGCTAGGACAAGAGGTTTTGGAGTTCGGGTTAGAACAACTAAGAAGAACTACATGAAGGTAACATGTGCTAGAGAGGGTTTTGCAGAATCAAAAAAAAAAAGTGTTGATCAAGTTTCTCACGGTAATTTGATAAAGAGGACATCATCAGCACGCATAGGGTGTGAAGCTTGTATTAAGGCTTGTACAAATGAAAAAATAAAATTGTGGAGAATTACATATTTTTCTGACAACCATAATCATGGTTTGGTTTCTCCAATGAGTGTTTCATATCTGAGATCACACAAAAAAATGCTTGCTGCTGCAAAATCCTTGATAGAAAAATTCAATGATTCGGGTTTGCCCATCGGAAAGGTTGCCACTATCCTTAGAGGCAATGATGTATTGTTTGATAGTCGAGATTGTTATAATCATATGAAAAATTGTGATGAAGATGATCGCATGGAAAGCTTTTTTTGGATTGATGCAAGGTCTAGGCAGGTTTATGAGCTTTTTGGGGATGTCATCACCTTCGACACAACATATAGGACTAATAAGTATTCCATGCCATTTGGACCTTTTGTTGGGATAAATAATCATTTGCAGTCAATCTTGTTCGGATGTGCTCTATTAAAAGATGAAATCGAGCAAACTGTTGTTTGGCTATTTGAGGAATGGCTTCGAGCAATGAATGGGAAACATCCGATTGCTATAATTACTGACCAAGACATGGCAATTACCAATGCGTGTGTTTGGAACTCCAAAAACACTGAAGACTTTGATGATAGATGGAATCATATTCTTGTTAAGTATGGTCTTGATGGAAATGAGTCCACTTTCTTTGCTGGTATGAACACTACGCAGCGGAGTGAAAGTATAAATTCATTCTTTGATGGTTTTGTTACAGCTGGTACAACATTAAAAGAATTTGTGGAGAAATATAATCAAGCTGTAGATACTCGCTACGAGTCTTTCAGAAGGGAAAACTTTGAATCTATGCACAAAGAAAGGCGTTTGGTATTGAATATGCCATTGGAGAGACATGCAGCTAAAGAATATACCTCTAATATTTTTGACAAGTTCAGCAAAGAGCTGTGTGATAGTTTACAATACTCTACGGAGAAACTTGGAAATGACGGAGAATGGGTTACCTATAGAGTTTTTAATATGGAAGATATAGAAAATTCTGCAACAGTGGAGATAAAGGTGGATGATAAAGAAGCTAGGTGTTCTTGTCAATATTTTGAATTCATGGGAATCCTATGTAAGCATATTCTTGTTATTCTGTTTGTTGAAGGTGTTTATCAAATTCCTGAGCAATTCATTTTGCGTCGTTGGAGCAAGGAAAGAAATTATATACTAAGTTCATACAACGACACATGTTTTTCTCCTGGAGATGGACTCCTTCAGAACCTTCAGCTAAGCTCTAAATTGTCTAGACTTGCTGAGCTTGCAAAAAGGTCACACAAGGCATTTAGAATCATTGATGATGGTGTTGACGCTCTTACTGCGTTTGCAGAAAAGTGTTTAATATCTGAGGAGAGTGAGGGTCTGGAGGATTTCAACTTACATTCTTTGGATTCTCAACTCGAAGAGTCTTCCATTATGAACTTGAAGATCCTAACATTTCACAAACTAAAGGCCGTAAAAGGATTCAAAGTGGGATTGAAGAAGAATCAAAGCATACTAATATATATGGACATTGCAAGAAACGAGGACATAATAAGCAACTTTCTTTTGGACATAAAAGGACCAACTATAGCATTTTTGCCGGTGCTTGCATTTGAAGGGGGAACTAGAAGCAATATAATTTTGAGGTTGTGTTTTCTTTTGCCTAATGCTTCATCTTGCAGTGGGAAAGAAGCAAAATTTGGTGCCTTAAAAGATGGCCATATGTTTGAGTGTACAACTGGTCTCTCAAGGATGTATGGAATTTATCTTTTGTTGTCCATGCATACTGTTATCAGATCTTGA 2157 0.3644 MDEDVINSANFNENEDDMLDKLGDDILNEPINNMSNSVVLTPTKNIDCLIEVGMEFSERKDILDLFTTFARTRGFGVRVRTTKKNYMKVTCAREGFAESKKKSVDQVSHGNLIKRTSSARIGCEACIKACTNEKIKLWRITYFSDNHNHGLVSPMSVSYLRSHKKMLAAAKSLIEKFNDSGLPIGKVATILRGNDVLFDSRDCYNHMKNCDEDDRMESFFWIDARSRQVYELFGDVITFDTTYRTNKYSMPFGPFVGINNHLQSILFGCALLKDEIEQTVVWLFEEWLRAMNGKHPIAIITDQDMAITNACVWNSKNTEDFDDRWNHILVKYGLDGNESTFFAGMNTTQRSESINSFFDGFVTAGTTLKEFVEKYNQAVDTRYESFRRENFESMHKERRLVLNMPLERHAAKEYTSNIFDKFSKELCDSLQYSTEKLGNDGEWVTYRVFNMEDIENSATVEIKVDDKEARCSCQYFEFMGILCKHILVILFVEGVYQIPEQFILRRWSKERNYILSSYNDTCFSPGDGLLQNLQLSSKLSRLAELAKRSHKAFRIIDDGVDALTAFAEKCLISEESEGLEDFNLHSLDSQLEESSIMNLKILTFHKLKAVKGFKVGLKKNQSILIYMDIARNEDIISNFLLDIKGPTIAFLPVLAFEGGTRSNIILRLCFLLPNASSCSGKEAKFGALKDGHMFECTTGLSRMYGIYLLLSMHTVIRS 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1g00006 718 ProSiteProfiles Zinc finger SWIM-type profile. 458 494 IPR007527 GO:0008270
Gabi1g00006 718 Pfam SWIM zinc finger 462 490 IPR007527 GO:0008270
Gabi1g00006 718 SMART 26again6 469 496 IPR006564 GO:0008270
Gabi1g00006 718 Pfam MULE transposase domain 236 311 IPR018289 -
Gabi1g00006 718 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 50 557 IPR031052 GO:0006355
Gabi1g00006 718 Pfam FAR1 DNA-binding domain 66 152 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1g00006 Gabi-Chr1 108787 111775 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gabi1g00006 FAR1 4.3e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1g00006 - - vvo:131633311 453.751