Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi199g00010 ATGATCCGAAAAATAAAAGGGTCGGATCGCCGGATACTGTCGTTCCCGGCGGTTCATCCCTGCGAGGACGTTTCTCTCTCTACCATTGTCTCTTCTCTCATCACTCTCTCTCACGACATTTCGAATTTCCAATATAGATTCTTCCCATGTAACAAGCGAAACGCGAGAAACGCCGTTCGTTTGATTCAGCTTCTCCAACCGTTCCTCTATGAGATCCGAGACTTGAAGTCGGGTCTACCGGATCCGGCGACCCTGATCTTGTCGGAGCTCCATCTGGCCTTCCAGAAGCTTCGTTTCTTGCTGGAAGACTCTGCTCGAGAGGGTGCCCGGTTGCTGATGTTAATGGAGTCGGAGCGGGTCGCCAATCAGTTTCGGGTCTTATCCGGATCCATGGCCACGGCTCTGGACGTTTTCCCTTTCGGTTCTGTTGAGGTTTCGGAGGAAGCAAGAGAGCAGGTTGTGCTGCTGATGAAGCAAGCGAGGAAGGGTAGGTTTGAAGTTGAGCCCGATGATAAACGGGCTGTGATGGTTGTTATGTCGGTTTTGAACCGGTTTCAGAACCGGGTCGCTCCGAATGAGGGTGATCTTAAGTGGGTTCTTGATTATATTGGGGTTTGTAGGTGGAGTGAGTGTAACAAGGAGGTGAAGTTTTTGGATGGTGAAATTGGGTTTGAGTGGTTGAATGAGGGAAAGAGAAAGGTGGGTTTTTTGAGCAGTTTAATGGGGTTCATGAGCTACTGTAGGTGCGTGGTGATGGAAGTTATTGATGATGGTGAAGAAGGTAACAAGAAATCTGAAGCAGGAATTGAGAGTGAGATGAATTTGAGTTGCCTCAACACTGATGATTTTCGATGTCCAATCTCTCTGGATTTGATGAGTGATCCTGTGACAATAGAGACAGGTCATACTTATGATCGTTCTTCAATTCTCAAATGGTTCAGAAGTGGAAATGCAATATGTCCCAAGACAGGTAAAAGGCTTAGCAGCACTGAATTGGTTCCAAACTTAGTGCTTCGGAGGTTGATTCAGCAGTATTGCTTTAAGAATGGGATTCCTTTTGCTGCTGACATGGGTCGTCGGAATCGTGACATCACTAGGACAGTTCAGCCTGGAAGTTTAGCAGCAGAGGAAGCCATGAAAATGGTGGCTGTTTTTCTCAGTGGCAGGCTTGAGAATGGAGCAGTACAAGAGAAGAACCGAGCTGCATTTGAGATAAGGCTTCTTTCCAAAACAAGCATTTTTAGCAGGTCTTGTTTGGTGGAAGCTGGTTCGGTCCCTCTTTTGTTGAAGTTGCTTTCATCGAGGGATTCATCGGCACAAGAGAATGCCGTTGCAGCCCTTTTGAACCTCTCAAAATGCCACAAGAGCAGAGATGAGATGGTTGAGAATTGTGGATTGGAATTGATTGTGGGGGTATTAAAGAAGGGGCTAAAGATTGAAGCTCGTCAGCATGCTGCTGCTGTGTTGTTTTACCTTGCTTCAAATGCTGAGTATGGGAAATTGATAGGGGAGGAACCAGAAGCAATCCCATCATTGATCAGGCTCATCGAAGATGGTTCTGATCGAGGTAAAAAGAATGGCTTGGTTGCGATGTTTGGCCTCCTAAAGCACCCTGAAAACCATAGGAGGGTGCTTGCTGCTGGATCAATTCCTTTACTCGTTCACATCTTAAAATCATGTGAAAAAGAAGACCTTGTCACAGATACGCTAGCAATTCTAGCAAGTCTGGCAGAGAAAAGTGATGGAACATTAGCAATTCTTCAATTTGGAGCTTTGCATGTAGCGGTTGAAATTTTGAATTCTTCCACTTCAAGGGTGGGGAAGGAGCACTGCGTGTCTTTATTGCTTTCTCTATCAATAAATGGAGGAGTAGATGTGGTTGCTCAGTTAGTGAAGAACCCTTCTCTTATGGGATCTTTATATTCCCAAATCAGTGAAGGCACGTCTCGAGCAAGCAAGAAGGCCAGTGCCCTCATCAGGGTCCTCCATGATTTTTACGAAAGGAGGCCCTCTGGATTCAAGACTTCAGCTATTCCACAAGAACAATCCATTCATGTGTGGTAA 2064 0.4593 MIRKIKGSDRRILSFPAVHPCEDVSLSTIVSSLITLSHDISNFQYRFFPCNKRNARNAVRLIQLLQPFLYEIRDLKSGLPDPATLILSELHLAFQKLRFLLEDSAREGARLLMLMESERVANQFRVLSGSMATALDVFPFGSVEVSEEAREQVVLLMKQARKGRFEVEPDDKRAVMVVMSVLNRFQNRVAPNEGDLKWVLDYIGVCRWSECNKEVKFLDGEIGFEWLNEGKRKVGFLSSLMGFMSYCRCVVMEVIDDGEEGNKKSEAGIESEMNLSCLNTDDFRCPISLDLMSDPVTIETGHTYDRSSILKWFRSGNAICPKTGKRLSSTELVPNLVLRRLIQQYCFKNGIPFAADMGRRNRDITRTVQPGSLAAEEAMKMVAVFLSGRLENGAVQEKNRAAFEIRLLSKTSIFSRSCLVEAGSVPLLLKLLSSRDSSAQENAVAALLNLSKCHKSRDEMVENCGLELIVGVLKKGLKIEARQHAAAVLFYLASNAEYGKLIGEEPEAIPSLIRLIEDGSDRGKKNGLVAMFGLLKHPENHRRVLAAGSIPLLVHILKSCEKEDLVTDTLAILASLAEKSDGTLAILQFGALHVAVEILNSSTSRVGKEHCVSLLLSLSINGGVDVVAQLVKNPSLMGSLYSQISEGTSRASKKASALIRVLHDFYERRPSGFKTSAIPQEQSIHVW 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi199g00010 687 Gene3D - 386 506 IPR011989 -
Gabi199g00010 687 PANTHER U BOX DOMAIN-CONTAINING 52 662 - -
Gabi199g00010 687 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Gabi199g00010 687 Pfam Armadillo/beta-catenin-like repeat 416 451 IPR000225 GO:0005515
Gabi199g00010 687 CDD RING-Ubox_PUB 281 332 IPR045210 -
Gabi199g00010 687 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 352 IPR013083 -
Gabi199g00010 687 FunFam RING-type E3 ubiquitin transferase 360 673 - -
Gabi199g00010 687 FunFam RING-type E3 ubiquitin transferase 279 351 - -
Gabi199g00010 687 Gene3D - 507 642 IPR011989 -
Gabi199g00010 687 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 548 591 IPR000225 GO:0005515
Gabi199g00010 687 SUPERFAMILY ARM repeat 389 662 IPR016024 -
Gabi199g00010 687 SUPERFAMILY RING/U-box 281 352 - -
Gabi199g00010 687 SMART arm_5 453 494 IPR000225 GO:0005515
Gabi199g00010 687 SMART arm_5 537 578 IPR000225 GO:0005515
Gabi199g00010 687 SMART arm_5 411 452 IPR000225 GO:0005515
Gabi199g00010 687 SMART arm_5 579 620 IPR000225 GO:0005515
Gabi199g00010 687 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 423 465 IPR000225 GO:0005515
Gabi199g00010 687 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Gabi199g00010 687 Pfam U-box domain 281 349 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi199g00010 Gabi-Chr199 107686 109907 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi199g00010 1 687 U-box Gene Family AT1G60190 47.504 0.0 586
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi199g00010 - - gmx:100795816 966.452