Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1999g00017 ATGGTGAGAGACAATCTATGCATAACGGTTCCGAGCTTCTTCAAGTGCCCTATCTCACTCGATGTCATGAAATCCCCTGTGAGCCTCTGCACCGGAGTTACCTACGACCGTTCCAGCATCCAACGCTGGTTAGATAACGGTAACAACACTTGCCCCGCAACCATGCAGGTTCTTCAAACCAAGGATTTCGTTCCTAACCGCACTTTGCACAGCCTCATCCGGATCTGGTCCGAATCCGTTACGCACCGGGTTGACCCGCCCGATTCCAAATCGGTCCTTTCACGTGACCAGGTCCTCCAAGCCATCATCGACATGGACACTCGCAGTGAAAACCGGTTCAGCTCGCTCGTAAAACTGGTTCGGTTCGCTGAAGATTGTGAAGATAACCGAGTCTTCCTTGCGAAAATAAACCGCTTAGTGCCCCTGCTGGTTGGTTTCCTCGACAATGTCGACGGCGGAGTAACAGGAAGCGTTGATTTTCTCGAACAAGTTGTGAAGGCGTTGAGTTTGGTCATGGATAAAATCGAAGATTGCGAGGGATTGAAAGACTCTATGTTGAAGGGAAAAAGTGGCTGCTTAGATTCTCTGCTTCTCGTTCTGCAACGAGGAAGCTCCGATTCAAAGATTGCCTCAGCTAGGGTTTTGAATTTCATCGCTCTGGACACCGATTCGAAGCTCTTGATCGCCGACAAGGAAGGCCTGGTAAACGAATTGCTGAATTTAGTGACGCCGGAGAAAGATCCGGCGCTAATCGAGATCGCCTTGGCGAGCTTGGTGGCGATCTCAACGCCGAAACGGAACAAGCTGAAACTCGTGAACCTCGGAGCGGTGAAGACGCTATCGGAGTTGCTATCGGAGTCGAATTTGAACGTGGCGGTGGTGGAGAAGGTGCTGAAGCTGATGGAAACGACGTCGTCGACGAGGGAAGGGAGGAGGGAGATATGCGAGGACGCGGCTTGCTTGGCGGCGATACTGAACAAGGTTCTGAAGGTGTCGAGCGTGGCGACGGAGCACGCGATGACGACGCTGTGGAGTGTTTGTTATCTGTTTGGGGATCACAAGGCACAAGAAGCGGTTACGCATGCGAATGGCTTGACCAAGATTCTGTTGTTGATGCAGAGCAATTGTTCGCCTCAGGTGCGCCAAATGTGCACCGATTTGCTCATGATTTTTCGGGTTAACTCTAAATCGTGCCTTTCTTGCTACGACACCAAAACCACACATATCATGCCGTTTTGA 1239 0.5117 MVRDNLCITVPSFFKCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLQTKDFVPNRTLHSLIRIWSESVTHRVDPPDSKSVLSRDQVLQAIIDMDTRSENRFSSLVKLVRFAEDCEDNRVFLAKINRLVPLLVGFLDNVDGGVTGSVDFLEQVVKALSLVMDKIEDCEGLKDSMLKGKSGCLDSLLLVLQRGSSDSKIASARVLNFIALDTDSKLLIADKEGLVNELLNLVTPEKDPALIEIALASLVAISTPKRNKLKLVNLGAVKTLSELLSESNLNVAVVEKVLKLMETTSSTREGRREICEDAACLAAILNKVLKVSSVATEHAMTTLWSVCYLFGDHKAQEAVTHANGLTKILLLMQSNCSPQVRQMCTDLLMIFRVNSKSCLSCYDTKTTHIMPF 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1999g00017 412 Gene3D - 96 402 IPR011989 -
Gabi1999g00017 412 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Gabi1999g00017 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 85 IPR013083 -
Gabi1999g00017 412 SUPERFAMILY ARM repeat 106 394 IPR016024 -
Gabi1999g00017 412 SUPERFAMILY RING/U-box 8 79 - -
Gabi1999g00017 412 CDD RING-Ubox_PUB 11 63 IPR045210 -
Gabi1999g00017 412 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Gabi1999g00017 412 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Gabi1999g00017 412 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Gabi1999g00017 412 PANTHER WDSAM1 PROTEIN 9 400 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1999g00017 Gabi-Chr1999 243802 245040 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1999g00017 1 412 U-box Gene Family AT5G64660 52.732 4.25e-140 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1999g00017 - - gmx:100799627 586.645