Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1999g00016 ATGTCATGCGGTGAAATTGATATTCAGTTTCCTTTCGGTTTGAAAGGAGCCAATAAAGGTCGTCGATGTAGCTACCCAAGATTCCAACTTTCATGCGACAAACAAAACCAGACCATTCTTAAACTCTCAGATTCAGGGGATTTGGTCGTGAAAAGCATCAATTACGAGGACCAAACCATTAAGGTAAACGACCCCGATGGTTGTCTCCCAAAACGTTTCTTAGAGAACTTGAGCCTTTCCGTGTCCCCACCATTCATGTTTGATGCCAGCGTTTATGGGTTTTATGACCTCACTTTCTTTCGTTGTCCTTACAACGTAACAAAGACATATCCAGTGCCATCAATTTCTTGCATCAGCGATAACTCTTCATCGGTGATATTTTCATTGTGGAGCAGACCTATTGACACATCACCGTGGCATGAGTGTGAGGTGATGTCATCAGCGCTTGTTCCCATTCCAAATTCAATCATGGAAACATCGCCCTTCTTCTCCCCTGATCTTAACAATGATATTGAGTTGAAGTGGAACAAGCCCACGTGCGGGGATTGTGCTGCTCGTGGCCAAGTTTGTGGCTTCAAAGGTGATACTACGACTCTTCAAGTTGGATGCTTATCCAGTCCCAAAAAATAG 630 0.4381 MSCGEIDIQFPFGLKGANKGRRCSYPRFQLSCDKQNQTILKLSDSGDLVVKSINYEDQTIKVNDPDGCLPKRFLENLSLSVSPPFMFDASVYGFYDLTFFRCPYNVTKTYPVPSISCISDNSSSVIFSLWSRPIDTSPWHECEVMSSALVPIPNSIMETSPFFSPDLNNDIELKWNKPTCGDCAARGQVCGFKGDTTTLQVGCLSSPKK 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1999g00016 209 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 205 IPR046948 -
Gabi1999g00016 209 Pfam Wall-associated receptor kinase galacturonan-binding 2 64 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1999g00016 Gabi-Chr1999 232029 232658 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1999g00016 2 204 C3H Transcription Factor Family AT2G46495 33.495 4.79e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1999g00016 - - aip:107630699 202.986