Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1999g00015 ATGGCTACGTTGTCAATTTCTTTCTTATTTTCCATGGTACTCTTGCTTCCTCACTCAACAAGAAGCACAACTCCAGTTTGCGACAAGAGATATTGCGGAAGCCCTGATCGGGAACTTCCTATTGAGTTCCCTTTCCAATTAATAGAAGGCAATAATCAAAGCAATCGATGTGGGTACCCAGGGTTTGATGTTTTGTGTAATGATAGGAAGCAGAAATTGCTTAAACTCTCACAGGAAATAGGAGAATTCGTTGTCAACTACATATCCCTTGAGAAGCAAAGAATTTGGATTAACGACCCCGATGCGTGTCTCCCTAGAAGGTTAATGCAAAACATGAACCTCAATGATTCACCTTTCCGATGGGACAAGGACAGTTATGATAATTTTGAAAAATTAACCATTCTCAACTGCACGAAATTAGCAGCGAAGTTAATAGTTGAGGGGATATTATATCCTATACCCTGCCTAAGCAATAACAATCATTCGATCACGTATGCGTTGAACTCGTCTCTGGATTCGTGGAAATCATCGTGCAATGAGATTGGCTTTGCATTGGTTCCGGTTAAAGATCATTCCAAAGATTCATCCATAATCGAGGAGGGACTTTACTCTGATATCATGTTGCAATGGAATACACCTCTGTGTGAATGTGAAGCAGACCAACGTTGTGGCTTTTTAACGGATACGGGTCTTACCGTTACTTGTTACAACTTTACTAGCCCGGGTGGAAGTCCCCCAATTTCTCGCCCTGGGCCTAGGAGAGTCATTTTCTTTCTAGTCTGGGGAATAACTGGATTCCTGTTCTTCTTCTATTGGATAGTTTTATCTGTGTTTAGAAGGAGGAGGCATAGCCAGCAACGATGGACAAACATAGAATCAAATATCCGGGAACCCCCTGGGGTAGTGGTGGTGCTTGATGGATCAAGGATAGAACAATATCCAAAGTTCCAACTAAATGAAAGTGGACAATTTAACGACTCATCCATCGACAAAGTATGTTCAATATGTCTTGGTGAGTACCAGCCCATGGAGACATTAAGGAGCATGCCCCAGTGCAATCACTATTTTCATGTCCATTGTATAGATGCTTGGCTCAAGATGAATGCTACCTGCCCCTTATGCCGAAATGAGCCAGAGGGATCTGTTTTGGTTACCTCTTCCTTGCCTCCTTCTACGTACAGCTTCACATGA 1191 0.424 MATLSISFLFSMVLLLPHSTRSTTPVCDKRYCGSPDRELPIEFPFQLIEGNNQSNRCGYPGFDVLCNDRKQKLLKLSQEIGEFVVNYISLEKQRIWINDPDACLPRRLMQNMNLNDSPFRWDKDSYDNFEKLTILNCTKLAAKLIVEGILYPIPCLSNNNHSITYALNSSLDSWKSSCNEIGFALVPVKDHSKDSSIIEEGLYSDIMLQWNTPLCECEADQRCGFLTDTGLTVTCYNFTSPGGSPPISRPGPRRVIFFLVWGITGFLFFFYWIVLSVFRRRRHSQQRWTNIESNIREPPGVVVVLDGSRIEQYPKFQLNESGQFNDSSIDKVCSICLGEYQPMETLRSMPQCNHYFHVHCIDAWLKMNATCPLCRNEPEGSVLVTSSLPPSTYSFT 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1999g00015 396 SMART ring_2 333 374 IPR001841 -
Gabi1999g00015 396 Pfam Ring finger domain 332 375 IPR001841 -
Gabi1999g00015 396 SUPERFAMILY RING/U-box 322 377 - -
Gabi1999g00015 396 ProSiteProfiles Zinc finger RING-type profile. 333 375 IPR001841 -
Gabi1999g00015 396 Pfam Wall-associated receptor kinase galacturonan-binding 27 99 IPR025287 GO:0030247
Gabi1999g00015 396 CDD RING-H2_EL5-like 333 375 - -
Gabi1999g00015 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 380 IPR013083 -
Gabi1999g00015 396 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 378 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1999g00015 Gabi-Chr1999 226947 230073 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1999g00015 43 378 C3H Transcription Factor Family AT2G25410 33.815 7.88e-47 162